Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq1501 138 2e-27 >seq1501 Length=377221 Score = 138 bits (152), Expect = 2e-27 Identities = 175/238 (74%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 122420 GACCGTACGGGCACGGGCACCC-TGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCA 122478 ||||| || |||||||| || | || |||| ||||| ||||||||||| | || Sbjct 70289 GACCGAACTGGCACGGGTACTCGTGCCGTT-TTCGGTCACCAAATGCGCTTCAATCTCAG 70347 Query 122479 AAAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCT 122538 || || ||||| || | || || || ||| ||||||| ||||||||||| |||||| Sbjct 70348 CAAGGGCTTCCCCGTGCTGACCACAAAGAAGCTTCACCTGCGCTCCATCATTGTTGAGCT 70407 Query 122539 TCTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTAT 122598 || |||||||| || || || || ||| | | || ||||| ||||||||| || Sbjct 70408 ACTTTGGTTCCTTCGTGGAGACACGAATATCAAATGGCTCAAAGAAAACAACGTCTCCAT 70467 Query 122599 CTGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGG 122656 |||||| |||||||| ||||| |||| | || ||||| || ||||| ||||| ||| Sbjct 70468 CTGGGACGAATGGGCCGATGAGAATGGGGACCTGGGCCCCGTCTACGGAAAGCAGTGG 70525 Score = 116 bits (128), Expect = 6e-21 Identities = 223/324 (69%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 123071 TTGTCCTGTCAGCTGTATCAGCGCAGTGCTGACATGTTCCTAGGCGTACCGTTTAACATT 123130 ||||| || |||||||| |||||||| || ||||| ||||| ||||| ||||| ||||| Sbjct 113742 TTGTCGTGCCAGCTGTACCAGCGCAGCGCGGACATCTTCCTGGGCGTGCCGTTCAACATC 113801 Query 123131 GCCTCTTACGCGCTCCTGATACACATGTTTGCCCAGCAGGCCAATATGGCAGTAGGTGAC 123190 || |||||||| |||| || ||| | || ||||| | ||| | || ||| Sbjct 113802 GCGAGCTACGCGCTGCTGACGCAGATGCTGGCGCAGCAATGCGGACTGGGGCTCGGGGAC 113861 Query 123191 TTCGTGTGGACGGGTGGGGATGTGCATCTGTACTCCAACCACCTGGAGCAGG--CAGATT 123248 ||| | |||||||| ||||| || | ||| | || ||| | ||||||| |||| Sbjct 113862 TTCATCTGGACGGGCGGGGACTGCCACATCTACGCAAATCACTTCGAGCAGGTGCAGAC- 113920 Query 123249 TGCAGTTAACTCGCGAACCTCATCCGTTACC-ACAACTGCGGATTAAACGTCGTCCGGAT 123307 |||| | | ||||| || || ||| || || | || ||| || || | |||| Sbjct 113921 -GCAGCTGGCGCGCGAGCCGTATGCGTACCCGACGA-TGGTGATCAAGCGCCAGCCGGCG 113978 Query 123308 TCTATCTTCGACTATAAGTTTGAAGATTTCGAAGTGGTCGGATACGAATCGCATGACGCT 123367 || ||||||||||| |||| || || ||||| || | ||| | || | || Sbjct 113979 TCGATCTTCGACTACGAGTTCGAGGACTTCGAGCTGCAGGACTACCAGCACCACGCGGCG 114038 Query 123368 ATTAAGGCACCGGTGGCGATATGA 123391 || ||||| ||||||||| | ||| Sbjct 114039 ATCAAGGCGCCGGTGGCGGTGTGA 114062 Score = 96.9 bits (106), Expect = 5e-15 Identities = 173/250 (69%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 122419 AGACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCA 122478 |||||| ||||| |||||||| | | | ||||| || ||||| || || ||| | Sbjct 69650 AGACCGCACGGGAACGGGCACGCGGAGCGTCTTCGGTCATCAGATGCGATTCGATCTGAA 69709 Query 122479 AAAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCT 122538 | || |||||||| || ||||| || ||||| || || || ||||||| ||||| Sbjct 69710 CGAGGGATTCCCGCTCGTGACGACGAAGAAGGTGCATCTGAAGTCGATCATCCTGGAGCT 69769 Query 122539 TCTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTAT 122598 ||||||||||| || || | ||| || ||| || | || | | || || Sbjct 69770 GCTGTGGTTCCTGCGCGGGGACTCGAACGTCAAGTGGTTGCAGGAACGCGGCTGCACGAT 69829 Query 122599 CTGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658 |||||| || ||||| || || ||| | || || ||||||||||| ||||||||| Sbjct 69830 CTGGGACGAGTGGGCGCGCGAGGACGGTGACCTGGGGCCGGTGTACGGCGTGCAATGGCG 69889 Query 122659 TGAG-TGGCC 122667 ||| ||||| Sbjct 69890 -GAGCTGGCC 69898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777610955334000