Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq100 495 4e-135 seq1335 82.4 8e-11 >seq100 Length=112360 Score = 495 bits (548), Expect = 4e-135 Identities = 720/1009 (71%), Gaps = 6/1009 (1%) Strand=Plus/Plus Query 162129 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTT-TT 162187 || |||||||| |||| |||| | || || ||||| || |||||||| || || || || Sbjct 28586 GATGACTGGCTAAAAAAAGACAGATTTGTATTTGTAGGATGGTCTGGT-TTATTATTATT 28644 Query 162188 TCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTG 162247 ||| || ||| | ||||| || || ||| ||||||| | || || || || ||| Sbjct 28645 TCCGTGCGCGTATTTAGCTCTAGGAGGATGGTTTACTGGAATCACATTTGTTACCTCTTG 28704 Query 162248 GTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGT 162307 |||||| || || | || || |||| | | || ||| || ||| | || || || || Sbjct 28705 GTATACCCATGGCTTAGCTAGCTCCTTTTTAGAAGGTTGTAATTTTTTAACGGCTGCTGT 28764 Query 162308 TTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCA 162367 ||| || ||||| | |||||| |||||| | || ||| ||||||| || || | || Sbjct 28765 TTCAACACCAGCTAATAGTATGGGACATTCTTTACTTCTTTTATGGGGACCAGAAGCGCA 28824 Query 162368 AGGGGACTTCATCCGC-TGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACG 162426 ||| | || || | |||| || |||| || || ||||| ||||| || | |||| Sbjct 28825 AGGAAATTTT-TCTGTATGGTTTAAAATTGGAGGTCTTTGGACATTTGTTGCCTTACACG 28883 Query 162427 GAGCCTTTGCACTTATAGGTTTCATGCTT-CGCCAGTTTGAACTGGCACGACTTATCGGT 162485 |||| |||||||| || || || ||||| || || |||||| | || ||| | | || Sbjct 28884 GAGCTTTTGCACTAATTGGATTT-TGCTTACGACAATTTGAAATTGCTCGATTAGTAGGA 28942 Query 162486 ATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGTTAGTGTTTTT 162545 ||||| |||||||||||| | || || |||| || || || | || ||| |||||| Sbjct 28943 ATTCGACCTTACAATGCTTTAGCATTTTCAGCACCGATCGCCATTTTTGTTTCCGTTTTT 29002 Query 162546 CTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCA 162605 | | |||||||| || ||| | |||||| || ||||| || || || |||||| Sbjct 29003 TTACTTTATCCTTTAGGGCAAGCAAGCTGGTTTTTTGCACCAAGTTTTGGTGTTGCAGCA 29062 Query 162606 ATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCCTTTTCAC 162665 || || ||||| | || ||| | ||||| |||||||| ||||| ||||||| || || Sbjct 29063 ATTTTTCGATTTTTACTATTCTTACAAGGATTCCATAATTGGACATTAAATCCATTCCAT 29122 Query 162666 ATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCATGGAGTGACA 162725 |||||||| || || || | | || | ||| || || | ||| |||||||| | || Sbjct 29123 ATGATGGGAGTTGCTGGAGTATTAGGAGCTGCGTTACTATGTGCAATTCATGGTGCTACT 29182 Query 162726 GTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAAAGCATTTGACTCC 162785 ||||||||||| || || |||||||| || |||||| || |||| ||| ||| | | Sbjct 29183 GTTGAAAATACTCTTTATGAAGATGGAGATGCAGCAAATACATTTAGAGCCTTTACCCCT 29242 Query 162786 ACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGGTCACAGATTTTC 162845 || || ||||||||| ||||| |||||||| || ||| | || |||||||| ||||| Sbjct 29243 ACTCAATCGGAAGAAACATATTCCATGGTTACAGCCAACAGATTTTGGTCACAAATTTTT 29302 Query 162846 GGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTTGTTCCCGTCATG 162905 || | |||||| || || | ||||| || || |||||||| |||||||| || | Sbjct 29303 GGAGTAGCTTTTTCCAATAAAAGATGGTTACACTTTTTTATGCTATTTGTTCCTGTAACC 29362 Query 162906 GGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCAATCTTCGTGCTTACGAC 162965 ||| | ||| |||| | || || ||| | ||||| || | || | || || || ||| Sbjct 29363 GGTTTATGGGCAAGCGCAATAGGAATTGTAGGACTTGCATTAAACTTACGCGCCTATGAC 29422 Query 162966 TTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGAGACGTTCTATACAAAG 163025 ||| | || |||||| | || || |||||||| || || || || || ||||||||||| Sbjct 29423 TTTATTTCGCAAGAATTACGAGCAGCAGAAGATCCGGAATTCGAAACATTCTATACAAAA 29482 Query 163026 AACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGTGGACCAACCTCATGAG 163085 || ||| || | ||||||||| | || |||| | || || ||||| || ||||| Sbjct 29483 AATATTATTTTAAATGAAGGAATAAGATTATGGATGGCTGCACAAGACCAGCCACATGAA 29542 Query 163086 AACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGCTCTATGAT 163134 || | | | || || |||||||| || ||| | || ||||| || |||| Sbjct 29543 AATTATATATTTCCAGAAGAGGTATTACCACGTGGAAACGCGCTTTGAT 29591 Score = 480 bits (532), Expect = 9e-131 Identities = 675/945 (71%), Gaps = 2/945 (0%) Strand=Plus/Plus Query 160916 TTGGTTGGTTCGGCGTCCTGATGATTCCCT-GCTTGCTCGCTGCTACCATTTGTTTCATC 160974 |||| |||||||| || |||||||||| |||| | | ||||| | |||||||| Sbjct 40192 TTGGATGGTTCGGAGTTGTGATGATTCCTACGCTTT-TAACAGCTACTACATGTTTCATT 40250 Query 160975 ATTGCCTTCGTTGGTGCTCCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGT 161034 || | || | | ||||| || || ||||| || || ||||| || || || ||||| Sbjct 40251 ATCGGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCTGGA 40310 Query 161035 TCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATC 161094 || || | |||||||||||||| || | || | |||| ||| ||| ||||| || Sbjct 40311 TCCCTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCAATT 40370 Query 161095 GGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGT 161154 ||| | || || || || || |||||||| || | | || |||||| | || |||||| Sbjct 40371 GGTGTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAACGGT 40430 Query 161155 GGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGT 161214 ||||| | ||||| | || || |||||| | | || | | ||| | |||||| Sbjct 40431 GGTCCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGTCGT 40490 Query 161215 GAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCT 161274 ||||||||| | | || | |||||||| |||||||||| || || | || ||| Sbjct 40491 GAGTGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCCGCT 40550 Query 161275 CCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCT 161334 || || |||||||| | || || ||| | | ||||| | || ||||| ||| ||| Sbjct 40551 CCAGTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTTTCT 40610 Query 161335 GATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAG 161394 |||| |||||| | || || || || || || |||| |||| | || |||||||| ||| Sbjct 40611 GATGGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCCGAG 40670 Query 161395 CACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCT 161454 || ||||| | ||||| || || || ||| || ||||| || || ||||| ||||| Sbjct 40671 CATAACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGTTCA 40730 Query 161455 CTGTTCAGTGCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAA 161514 | || |||||||||||| || | || || || || | |||||||||| | ||| Sbjct 40731 TTATTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCTGAA 40790 Query 161515 AACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTT 161574 | ||| || | || ||||| ||||| || || ||||||||||| || || || || ||| Sbjct 40791 AGCGAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATATTGTT 40850 Query 161575 GCTGCCCACGGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGC 161634 ||||| ||||| || ||||| | | ||||| |||||||| || || ||||| || Sbjct 40851 GCTGCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCACGT 40910 Query 161635 TCGCTGCACTTCTTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGC 161694 || | ||||||||| | ||||| ||||| || ||||| || ||||| |||||| | || Sbjct 40911 TCATTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATTAGGA 40970 Query 161695 GTAAGCACCATGGCATTCAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGT 161754 | || || ||||| || ||| | || || || ||||| || || || || ||||||| Sbjct 40971 ATTAGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGC 41030 Query 161755 CAGGGTAAAGTTATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAA 161814 || || | ||| || ||||| |||||||| || | ||| | || |||||| || ||| Sbjct 41031 CAAGGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAATCGAA 41090 Query 161815 GTGATGCACGAGCGCAATGCTCACAACTTCCCTCTTGACCTTGCT 161859 || ||||| || || |||||||| |||||||| | || |||||| Sbjct 41091 GTAATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGCT 41135 >seq1335 Length=20771 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 157690 CGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAA 157749 |||||||||||||||| ||||||||| |||| | ||| |||| |||||| ||||||| Sbjct 5557 CGGGGTGTAGCGCAGCCTGGTAGCGCACTTGCATGGGGTGCAAGGGGTCGCGAGTTCGAA 5616 Query 157750 TCCTGTCACCCCGAC 157764 ||| | ||||||||| Sbjct 5617 TCCCGCCACCCCGAC 5631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547732376591400