Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq100 513 4e-141 >seq100 Length=112360 Score = 513 bits (568), Expect = 4e-141 Identities = 719/1001 (72%), Gaps = 12/1001 (1%) Strand=Plus/Minus Query 17833 AAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGT 17892 |||| | ||||| |||||||||||||||||||| || ||||| ||||| | ||||| | Sbjct 41136 AAGCAAGATCTAATGGGAAGTTATGAGCATTACGTTCATGCATTACTTCGATTCCAAGAT 41077 Query 17893 TAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTG-CTACAATG 17951 | |||||||| | | || ||||| || | ||| |||| ||| | | ||| Sbjct 41076 TTGCTCTGTTTACAATATCTGCCCAAGTGTTAATTACTCTTCCTTG-GCTATCAATAATC 41018 Query 17952 GATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 18011 ||||| || ||||| ||||| || | ||||| ||||| || ||||| | | || Sbjct 41017 GATTGATTAAAGTTAAATCCGTTTAAGTTAAAGGCCATTGTACTAATTCCTAATGCAGTT 40958 Query 18012 AGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTA--GACTCCTGCTATTGT 18069 | ||| || | | || ||||| ||||| |||||||| |||| || | || || | Sbjct 40957 AACCAAATTCCAACTACTGGCCATGCAGCTAAGAAGAAGTGTAATGAA-CGTGAG-TTAT 40900 Query 18070 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTAT 18129 |||| || || || || || || | ||| || || || || ||||| ||||||||||||| Sbjct 40899 TAAAACTTGCGTATTGAAAAATTAATCTTCCGAAATATCCGTGAGCAGCAACAATATTAT 40840 Query 18130 ACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTT 18189 | || ||||||||||| |||||||| |||||||| || | || || |||| |||| Sbjct 40839 ATGTTTCTTCTTCTTGTCCAAATTTGTATCCATAATTTGGTGATTCGCTTTCAGAAGTTT 40780 Query 18190 CTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGA 18249 | | ||||| ||| ||||| || | | ||||||||| |||| ||||| | || || | Sbjct 40779 CACGAATAATTGATGAAGTTACTAAAGATCCGTGCATTGCAGAAAATAATGAACCTCCAA 40720 Query 18250 ATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGA 18309 | || || || ||||| ||| || || |||||||| | || || || |||||||||| Sbjct 40719 AAACTCCAGCTACACCAGCCATGTGAAATGGATGCATTAATATGTTATGCTCGGCTTGGA 40660 Query 18310 ATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCC 18369 | || |||||||| || ||||| || ||| || | ||||||||||||||| ||||| | Sbjct 40659 AAACTAACATGAAGTTAAAAGTCCCTGAAATCCCTAAAGGCATACCATCAGAAAAACTTC 40600 Query 18370 CTTGTCCAAAAGGATAAACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAG 18429 ||||||| | ||||||| | ||||| | || || |||||||| |||||| | | Sbjct 40599 CTTGTCCTATCGGATAAATTAAGAATACAGCTGTTGCTGCAGCTACTGGAGCGGAAAAGG 40540 Query 18430 CAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGT 18489 ||||| ||||||| |||||||| |||| | | | || | |||||| | || || | | Sbjct 40539 CAACAAAAATCCAAGGGCGCATTCCTAAGCGAAAGCTTAATTCCCACTCACGACCTAAAT 40480 Query 18490 AAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATA 18549 || || | || | | ||||| || || || ||||||||||| || |||||||||| Sbjct 40479 AACAAGCTACACCTGTTAAGAAGTGTAATACTATCAGTTGATATGGACCACCGTTATATA 40420 Query 18550 ACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAG 18609 |||| || || | | ||||||||||| || || || || |||| ||| |||||||| | Sbjct 40419 ACCATTCATCAATAGAAGCAGCTTCCCATATAGGATAAAAATGAACACCAATTGCGTTTG 40360 Query 18610 ATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAG 18669 | || | |||| |||| || |||||||||||||| | || || ||| | || | Sbjct 40359 AACTAGGAATAATTGATCCTGTAATAATGTTGTTTCCATATAATAGGGATCCAGCTACTG 40300 Query 18670 GCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGC---AATCAAAAATG 18726 |||| ||||| ||||| ||||| || |||||||| || | ||| | ||| ||| ||| Sbjct 40299 GCTCGCGAATTCCATCAATGTCTACTGGAGGAGCTGCGATAAAACCGATAATGAAACATG 40240 Query 18727 CTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGC 18786 |||||| |||||||| | ||| ||||| | || || ||||| || | ||| | | Sbjct 40239 TAGTAGCT---GTTAAAAGCGTAGGAATCATCACAACTCCGAACCATCCAATGTATAATC 40183 Query 18787 GGTTGTTTGTACTCGTAACCCAGTCACATAAACTTTCCCAG 18827 ||| | | ||| |||| ||| ||| || ||||||||| Sbjct 40182 TGTTTTCTAAACTAGTAATCCAAGAACAGAATCTTTCCCAG 40142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151314509698510