Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq100 538 4e-148 >seq100 Length=112360 Score = 538 bits (596), Expect = 4e-148 Identities = 730/1011 (72%), Gaps = 10/1011 (1%) Strand=Plus/Minus Query 101705 ATCACAGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTT 101764 |||| || ||||| || | ||| ||||||||||| ||||||| | | |||||||| || | Sbjct 29591 ATCAAAGCGCGTTTCCACGTGGTAATACCTCTTCTGGAAATATATAATTTTCATGTGGCT 29532 Query 101765 GATCGACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGA 101824 | || || |||| |||| | || |||||||| || | || || ||||| |||| Sbjct 29531 GGTCTTGTGCAGCCATCCATAATCTTATTCCTTCATTTAAAATAATATTTTTTGTATAGA 29472 Query 101825 ACGTCTCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 101884 | || ||||| || |||||||||||||||| | ||||| || | ||||||||| || | Sbjct 29471 ATGTTTCGAATTCCGGATCTTCTGCTGCTCGTAATTCTTGCGAAATAAAGTCATAGGCGC 29412 Query 101885 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAA 101944 | | ||| | ||||| || | ||| || || | |||| ||| | ||| | ||||||| Sbjct 29411 GTAAGTTTAATGCAAGTCCTACAATTCCTATTGCGCTTGCCCATAAACCGGTTACAGGAA 29352 Query 101945 CAAAGAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAG 102004 |||| |||||||| || || ||||| || ||||| ||| || | ||||| ||||| | Sbjct 29351 CAAATAGCATAAAAAAGTGTAACCATCTTTTATTGGAAAAAGCTACTCCAAAAATTTGTG 29292 Query 102005 ACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATG 102064 |||| || | ||| ||||||||||| ||||| || |||||| ||| || | || | Sbjct 29291 ACCAAAATCTGTTGGCTGTAACCATGGAATATGTTTCTTCCGATTGAGTAGGGGTAAAGG 29232 Query 102065 CTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGT 102124 || | || || |||||| ||| ||||||||||| ||||| || || ||||| |||| | Sbjct 29231 CTCTAAATGTATTTGCTGCATCTCCATCTTCATAAAGAGTATTTTCAACAGTAGCACCAT 29172 Query 102125 GGATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGT 102184 | ||||| | || | || |||| | | || ||||| ||||||||||||||||| | Sbjct 29171 GAATTGCACATAGTAACGCAGCTCCTAATACTCCAGCAACTCCCATCATATGGAATGGAT 29112 Query 102185 TGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACAC 102244 | | ||||| |||||||| || |||| ||| |||| |||| ||| || |||||||||| Sbjct 29111 TTAATGTCCAATTATGGAATCCTTGTAAGAATAGTAAAAATCGAAAAATTGCTGCAACAC 29052 Query 102245 CAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGA 102304 |||| || ||||| ||||| || | || || | |||||| | | ||| || | Sbjct 29051 CAAAACTTGGTGCAAAAAACCAGCTTGCTTGCCCTAAAGGATAAAGTAAAAAAACGGAAA 28992 Query 102305 CAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACC 102364 |||||| ||||| || | || || || | ||||||||| || |||||||| | ||| | Sbjct 28991 CAAAAATGGCGATCGGTGCTGAAAATGCTAAAGCATTGTAAGGTCGAATTCCTACTAATC 28932 Query 102365 TAGCCAACTCGAATTGACG-AAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCC 102423 ||| | || ||||| || ||||| || ||||| || ||||| || ||||| | || Sbjct 28931 GAGCAATTTCAAATTGTCGTAAGCA-AAATCCAATTAGTGCAAAAGCTCCGTGTAAGGCA 28873 Query 102424 ACAAAAGCCCAGAGTCCCCCAAGTTGGACCCA-CCTGACGAAATCTCCTTGAGCTTCAGG 102482 ||||| | ||| || || |||| || | ||| | || |||| |||||| ||||| || Sbjct 28872 ACAAATGTCCAAAGACCTCCAATTTTAAACCATACAGA-AAAATTTCCTTGCGCTTCTGG 28814 Query 102483 ACCCCAAAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGT 102542 ||||| | ||||| | |||||| |||||| | ||| || ||||| |||||||| || Sbjct 28813 TCCCCATAAAAGAAGTAAAGAATGTCCCATACTATTAGCTGGTGTTGAAACAGCAGCCGT 28754 Query 102543 AAGGAAATTAGCACCTTC---AAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGT 102599 | |||||| |||||| || | | ||| || | || ||||||||||| || || Sbjct 28753 TAAAAAATTACAACCTTCTAAAAAGGAGCTA---GCTAAGCCATGGGTATACCAAGAGGT 28697 Query 102600 AGCAAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAG 102659 | |||| || | ||||||| ||| || || | || | ||| || ||||| | | Sbjct 28696 AACAAATGTGATTCCAGTAAACCATCCTCCTAGAGCTAAATACGCGCACGGAAATAATAA 28637 Query 102660 TAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATC 102710 || |||||||| || ||||| ||||| | ||| ||| | ||||||||| Sbjct 28636 TAAACCAGACCATCCTACAAATACAAATCTGTCTTTTTTTAGCCAGTCATC 28586 Score = 453 bits (502), Expect = 1e-122 Identities = 661/944 (70%), Gaps = 0/944 (0%) Strand=Plus/Minus Query 103174 AGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAGACC 103233 |||||| || | |||||||| ||||| ||||| || ||||| ||||| || || ||| Sbjct 41135 AGCAAGATCTAATGGGAAGTTATGAGCATTACGTTCATGCATTACTTCGATTCCAAGATT 41076 Query 103234 AGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATGGA 103293 || | ||| | || |||||||| ||||| | || | || || | ||||| || || Sbjct 41075 TGCTCTGTTTACAATATCTGCCCAAGTGTTAATTACTCTTCCTTGGCTATCAATAATCGA 41016 Query 103294 CTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGTGAA 103353 || || ||||| |||||||| | ||| || ||||| || |||| || | ||| || || Sbjct 41015 TTGATTAAAGTTAAATCCGTTTAAGTTAAAGGCCATTGTACTAATTCCTAATGCAGTTAA 40956 Query 103354 CCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTTGAA 103413 ||| || || |||||||| | ||||| || || Sbjct 40955 CCAAATTCCAACTACTGGCCATGCAGCTAAGAAGAAGTGTAATGAACGTGAGTTATTAAA 40896 Query 103414 TGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGT 103473 ||||||||| || || || | ||||| || || ||||| || || || || ||||| Sbjct 40895 ACTTGCGTATTGAAAAATTAATCTTCCGAAATATCCGTGAGCAGCAACAATATTATATGT 40836 Query 103474 CTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTCACG 103533 ||||| |||||||| || ||||| ||||| ||| | ||||| |||||| || ||||| Sbjct 40835 TTCTTCTTCTTGTCCAAATTTGTATCCATAATTTGGTGATTCGCTTTCAGAAGTTTCACG 40776 Query 103534 AACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAAGAC 103593 || | || || || || | || |||||||| ||| || | |||||| || || || Sbjct 40775 AATAATTGATGAAGTTACTAAAGATCCGTGCATTGCAGAAAATAATGAACCTCCAAAAAC 40716 Query 103594 TCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGAC 103653 |||||| || || |||||| || || ||||| | |||||||| ||||||||||| || Sbjct 40715 TCCAGCTACACCAGCCATGTGAAATGGATGCATTAATATGTTATGCTCGGCTTGGAAAAC 40656 Query 103654 CAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTG 103713 | |||| |||| || || || ||||| || ||||||||| |||| || || ||||| Sbjct 40655 TAACATGAAGTTAAAAGTCCCTGAAATCCCTAAAGGCATACCATCAGAAAAACTTCCTTG 40596 Query 103714 ACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGAC 103773 || | || || | |||||||| || | || || || || ||||| || | || || Sbjct 40595 TCCTATCGGATAAATTAAGAATACAGCTGTTGCTGCAGCTACTGGAGCGGAAAAGGCAAC 40536 Query 103774 ACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATGC 103833 | | ||||| |||||||| || | || || |||||||||||||| || | ||| Sbjct 40535 AAAAATCCAAGGGCGCATTCCTAAGCGAAAGCTTAATTCCCACTCACGACCTAAATAACA 40476 Query 103834 ATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCA 103893 | | || | | |||||| ||||||| ||||| | |||||||||||||| | ||| Sbjct 40475 AGCTACACCTGTTAAGAAGTGTAATACTATCAGTTGATATGGACCACCGTTATATAACCA 40416 Query 103894 CTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGA 103953 ||||||| ||| || |||||||| || ||||| || |||| |||||||||||| || Sbjct 40415 TTCATCAATAGAAGCAGCTTCCCATATAGGATAAAAATGAACACCAATTGCGTTTGAACT 40356 Query 103954 GGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTC 104013 |||| || || || | || |||||||| || || | || || ||||| || || || Sbjct 40355 AGGAATAATTGATCCTGTAATAATGTTGTTTCCATATAATAGGGATCCAGCTACTGGCTC 40296 Query 104014 ACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAAGCAGATGGT 104073 ||||| || || || || || ||||| ||||| | ||| | | ||||| || | || Sbjct 40295 GCGAATTCCATCAATGTCTACTGGAGGAGCTGCGATAAAACCGATAATGAAACATGTAGT 40236 Query 104074 TGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAA 104117 || | || || || || ||||||| || |||||||| |||| Sbjct 40235 AGCTGTTAAAAGCGTAGGAATCATCACAACTCCGAACCATCCAA 40192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633496455538200