Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq100 499 9e-137 >seq100 Length=112360 Score = 499 bits (552), Expect = 9e-137 Identities = 675/941 (72%), Gaps = 0/941 (0%) Strand=Plus/Minus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 ||||| || | |||||||| || || || || |||||||| || || | ||||| || Sbjct 41134 GCAAGATCTAATGGGAAGTTATGAGCATTACGTTCATGCATTACTTCGATTCCAAGATTT 41075 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 || | ||| | ||| || ||||| ||||| || || ||| | | | | | ||| Sbjct 41074 GCTCTGTTTACAATATCTGCCCAAGTGTTAATTACTCTTCCTTGGCTATCAATAATCGAT 41015 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 || |||||||| || || || ||||| || ||||| ||| | || | |||| ||| Sbjct 41014 TGATTAAAGTTAAATCCGTTTAAGTTAAAGGCCATTGTACTAATTCCTAATGCAGTTAAC 40955 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 ||||| || || || ||||| ||||| | ||||| || | ||| || |||||||| Sbjct 40954 CAAATTCCAACTACTGGCCATGCAGCTAAGAAGAAGTGTAATGAACGTGAGTTATTAAAA 40895 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 || || ||||| || || | | || ||||| |||||||||||||||||||| || || Sbjct 40894 CTTGCGTATTGAAAAATTAATCTTCCGAAATATCCGTGAGCAGCAACAATATTATATGTT 40835 Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830 ||||| ||||| ||||| ||||| ||||| || |||| | ||||| || |||||| Sbjct 40834 TCTTCTTCTTGTCCAAATTTGTATCCATAATTTGGTGATTCGCTTTCAGAAGTTTCACGA 40775 Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACG 21890 || | ||| || || || | |||||||| ||||| || || || ||||| || Sbjct 40774 ATAATTGATGAAGTTACTAAAGATCCGTGCATTGCAGAAAATAATGAACCTCCAAAAACT 40715 Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950 || || ||||| ||||||||| |||||||| | || || ||||| || ||||| || Sbjct 40714 CCAGCTACACCAGCCATGTGAAATGGATGCATTAATATGTTATGCTCGGCTTGGAAAACT 40655 Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGT 22010 | |||| |||| || || || || ||||| || |||||| ||||||||||| || ||| Sbjct 40654 AACATGAAGTTAAAAGTCCCTGAAATCCCTAAAGGCATACCATCAGAAAAACTTCCTTGT 40595 Query 22011 CCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACA 22070 || | |||||||| | ||| ||||| || || || || || ||||| || | |||||| Sbjct 40594 CCTATCGGATAAATTAAGAATACAGCTGTTGCTGCAGCTACTGGAGCGGAAAAGGCAACA 40535 Query 22071 AAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCA 22130 || ||||| || | ||| |||| ||| |||| | ||||||||| || || | ||| | Sbjct 40534 AAAATCCAAGGGCGCATTCCTAAGCGAAAGCTTAATTCCCACTCACGACCTAAATAACAA 40475 Query 22131 AAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCAT 22190 || || | | |||||| ||||| | ||||| ||||||| ||||| || | |||| Sbjct 40474 GCTACACCTGTTAAGAAGTGTAATACTATCAGTTGATATGGACCACCGTTATATAACCAT 40415 Query 22191 TCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTC 22250 ||||||| | |||||||||||| || || || || || | || || || || || Sbjct 40414 TCATCAATAGAAGCAGCTTCCCATATAGGATAAAAATGAACACCAATTGCGTTTGAACTA 40355 Query 22251 GGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCT 22310 |||| | | ||||| || |||||||| ||||| || ||||| ||||| || || || Sbjct 40354 GGAATAATTGATCCTGTAATAATGTTGTTTCCATATAATAGGGATCCAGCTACTGGCTCG 40295 Query 22311 CGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTA 22370 || |||||||| ||||| || || || || | | ||| ||||||| ||||| || ||| Sbjct 40294 CGAATTCCATCAATGTCTACTGGAGGAGCTGCGATAAAACCGATAATGAAACATGTAGTA 40235 Query 22371 GCGGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCC 22411 || | | || |||||||| | |||||||||||||| Sbjct 40234 GCTGTTAAAAGCGTAGGAATCATCACAACTCCGAACCATCC 40194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146204241083700