Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1301 100 1e-16 seq1342 95.1 6e-15 >seq1301 Length=515170 Score = 100 bits (110), Expect = 1e-16 Identities = 297/453 (66%), Gaps = 4/453 (1%) Strand=Plus/Plus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 ||||| || ||| || ||||| |||||||| ||||| || || || | || | Sbjct 332680 TCAACACGCTTCATGAACAAATCATTAATCCACAAAGCATAGAACAAGTCACGAGCACGA 332739 Query 25982 ATTTCTTCTTTTCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCA 26040 | |||||| || || ||| ||||| || | ||| || || ||||||| || | |||||| Sbjct 332740 ACTTCTTCCTTCCCAGTG-TTCTTCTTCAAATCCAAAAAGTCAAAAACGTCAGCGTGCCA 332798 Query 26041 TGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCT 26100 ||||| || |||| |||||| ||| | || ||||||||||| ||||| | Sbjct 332799 CGGTTCCAAGTAGACGGCAAAAGCACCCGGACGCTTATTACCACCTTGATCAACGTAACG 332858 Query 26101 TGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCT 26160 || || | |||| |||| | ||| ||||| | ||| | || || || |||| Sbjct 332859 AGCCGTGTTATTGTAAACACGAAGCATGGGAACAAGACCATTGGATTGACCATTCGTGCC 332918 Query 26161 ATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCA 26220 | ||| | || || | | | ||| | |||| | | ||| || |||||||| | Sbjct 332919 AGAAATGTACGAACCAGCAGCACGAATGTTGTGAATGTTCAAACCAATACCACCAGCAGA 332978 Query 26221 TTTTGAAATAGCTGCACAA-TCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTT 26279 ||| ||||| |||||| ||| || || || |||| || | || ||| | Sbjct 332979 TTTGGAAATCAAAGCACAAGTCTTTAA-AGTTTCATAAATACCATCAATCGAGTCATCAG 333037 Query 26280 TCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATG 26339 ||| || || || |||||||| | ||| | |||| | || || | || || | | Sbjct 333038 ACATCGTCAACAAGAAGCAAGAAGACAGTTGAGGATGATTAGTACCGGCATGGAAGAGGG 333097 Query 26340 TCGGTGTAGCATGAGTATAATATCCTTCACTCA 26372 | |||| | | |||||| |||| |||||||| Sbjct 333098 TGGGTGAACCGTGAGTAAAATACTTTTCACTCA 333130 >seq1342 Length=132421 Score = 95.1 bits (104), Expect = 6e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 25930 CTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTC 25989 || |||||| | |||||| | ||||| ||| |||| ||||| | || | || Sbjct 2233 CTTCATAAAGAGATCTGGGACCCACAAGGCAAAAAACAAATCCCGAGCACGATGCAACTC 2174 Query 25990 TTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAA 26049 || ||||| || || | |||| || ||||| | ||| | |||||| || |||| Sbjct 2173 GTTGCCGTGGTTTTTCCGCAACTCTAGAAATTCAAACACATCAGCGTGCCAGGGCTCTAG 2114 Query 26050 ATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTC 26109 |||||| ||||| ||||| | ||| || ||||||||||| ||||| | || || || Sbjct 2113 ATAGATGGCAAACGAGCCTTTGCGTTTCCCGCCACCTTGATCGACGTACCGCGCCGTGTC 2054 Query 26110 ATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGC 26159 ||| || || ||||||||||| | ||| | || | ||||| |||| Sbjct 2053 ATTAAAGACGCGCAACATTGGAATGATGCCATTCGACGACCCGTTCGTGC 2004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253033323302375