Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq100 497 1e-135 >seq100 Length=112360 Score = 497 bits (550), Expect = 1e-135 Identities = 693/966 (72%), Gaps = 4/966 (0%) Strand=Plus/Minus Query 124041 CAGCAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATAC 124100 ||| | | || || |||| ||||||||| || ||||| | ||||||||| ||||| || | Sbjct 41142 CAGAAAAAGCAAGATCTAATGGGAAGTTATGAGCATTACGTTCATGCATTACTTCGATTC 41083 Query 124101 CCAAGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGC-ATCA 124159 | | ||||||||||||| || ||| |||| || | | | |||| || || |||| Sbjct 41082 CAAGATTTGCTCTGTTTACAATATCTGCCCAAGTGTTAATTACTCTTCC-TTGGCTATCA 41024 Query 124160 ACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATA 124219 | || ||||| |||||||| || || || ||||| || |||||||| | || || | Sbjct 41023 ATAATCGATTGATTAAAGTTAAATCCGTTTAAGTTAAAGGCCATTGTACTAATTCCTAAT 40964 Query 124220 GAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAG 124279 | |||||||| | | || || || | | |||| ||||||||| | | |||| Sbjct 40963 GCAGTTAACCAAATTCCAACTACTGGCCATGCAGCTAAGAAGAAGTGTAATGAACGTGAG 40904 Query 124280 TTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATG 124339 || || || || || || || || | | || || || ||||| || || || || Sbjct 40903 TTATTAAAACTTGCGTATTGAAAAATTAATCTTCCGAAATATCCGTGAGCAGCAACAATA 40844 Query 124340 TTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTT 124399 || |||||||||||||||||||| || || || ||||| || |||| || || | Sbjct 40843 TTATATGTTTCTTCTTCTTGTCCAAATTTGTATCCATAATTTGGTGATTCGCTTTCAGAA 40784 Query 124400 GTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCT 124459 ||||| | || | || || || || | ||| || |||||||| || ||||| || ||| Sbjct 40783 GTTTCACGAATAATTGATGAAGTTACTAAAGATCCGTGCATTGCAGAAAATAATGAACCT 40724 Query 124460 CCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCT 124519 || || | ||| ||||| || |||||||| || |||||||||| ||||||||||| ||| Sbjct 40723 CCAAAAACTCCAGCTACACCAGCCATGTGAAATGGATGCATTAATATGTTATGCTCGGCT 40664 Query 124520 TGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAAT 124579 |||||||| ||||| ||||| ||||| ||||| || || | |||||||||||||| || Sbjct 40663 TGGAAAACTAACATGAAGTTAAAAGTCCCTGAAATCCCTAAAGGCATACCATCAGAAAAA 40604 Query 124580 GAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAA 124639 || || || | || || | |||||||||||| ||| |||| |||||| || ||| Sbjct 40603 CTTCCTTGTCCTATCGGATAAATTAAGAATACAGCTGTTGCTGCAGCTACTGGAGCGGAA 40544 Query 124640 TAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCC 124699 | |||||| | |||||||| ||||||||||| | | || |||||||| | || Sbjct 40543 AAGGCAACAAAAATCCAAGGGCGCATTCCTAAGCGAAAGCTTAATTCCCACTCACGACCT 40484 Query 124700 ATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTA 124759 | || | | ||| | | |||||| || | || || ||||| |||||||| ||| Sbjct 40483 AAATAACAAGCTACACCTGTTAAGAAGTGTAATACTATCAGTTGATATGGACCACCGTTA 40424 Query 124760 TACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCG 124819 || ||||||||||||| || || |||||||| || || || || || | || || ||| Sbjct 40423 TATAACCATTCATCAATAGAAGCAGCTTCCCATATAGGATAAAAATGAACACCAATTGCG 40364 Query 124820 TTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCT 124879 ||||| |||| || || || | || |||||||| |||||||| | || || ||| Sbjct 40363 TTTGAACTAGGAATAATTGATCCTGTAATAATGTTGTTTCCATATAATAGGGATCCAGCT 40304 Query 124880 ACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAAA 124939 ||||| || | ||||| || || || || ||||| ||||| ||||| | | |||||| Sbjct 40303 ACTGGCTCGCGAATTCCATCAATGTCTACTGGAGGAGCTGCGATAAAACCGATAATGAAA 40244 Query 124940 CATGCTGCTGCTGTGAGTAAGCAT-GGAATCATTAGAACACCAAACCAACCAACATAAAT 124998 |||| | ||||| | |||| | |||||||| | ||| || ||||| |||| || | Sbjct 40243 CATGTAGTAGCTGTTA-AAAGCGTAGGAATCATCACAACTCCGAACCATCCAATGTATAA 40185 Query 124999 TCTGTT 125004 |||||| Sbjct 40184 TCTGTT 40179 Score = 450 bits (498), Expect = 2e-121 Identities = 722/1029 (70%), Gaps = 31/1029 (3%) Strand=Plus/Minus Query 122868 AAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTGGT 122927 |||| ||||| || | |||||| || |||||||| |||| | |||| ||||| || |||| Sbjct 29588 AAAGCGCGTTTCCACGTGGTAATACCTCTTCTGGAAATATATAATTTTCATGTGGCTGGT 29529 Query 122928 CAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAAAG 122987 | | | ||||||| ||| || |||||||| | || ||| || || |||||||| | Sbjct 29528 CTTGTGCAGCCATCCATAATCTTATTCCTTCATTTAAAATAATATTTTTTGTATAGAATG 29469 Query 122988 TCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCTGA 123047 | ||||| || || ||||||||||||| || ||||| || | |||||| || || | | Sbjct 29468 TTTCGAATTCCGGATCTTCTGCTGCTCGTAATTCTTGCGAAATAAAGTCATAGGCGCGTA 29409 Query 123048 GGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAACGA 123107 ||| | ||| || ||||| || ||||| | || ||| | ||| | |||||||| | Sbjct 29408 AGTTTAATGCAAGTCCTACAATTCCTATTGCGCTTGCCCATAAACCGGTTACAGGAACAA 29349 Query 123108 ACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGACC 123167 | | ||||| |||||||| ||||||| || ||||| || | ||||| || ||||||| Sbjct 29348 ATAGCATAAAAAAGTGTAACCATCTTTTATTGGAAAAAGCTACTCCAAAAATTTGTGACC 29289 Query 123168 AGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGCTC 123227 | |||||||| ||||||| ||| ||| |||||||| || ||||| || |||| Sbjct 29288 AAAATCTGTTGGCTGTAACCATGGAATATGTTTCTTCCGATTGAGTAGGGGTAAAGGCTC 29229 Query 123228 TGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGTGT 123287 | || || | | | | |||| || |||||||| | || | Sbjct 29228 TAAATGTATTTGCT-GCATCTC-----CA---------------TCTTCATAAAGAGTAT 29190 Query 123288 TCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAACAC 123347 | | || || ||||||||||| ||||||||||| || | |||| || ||| ||||| | Sbjct 29189 TTTCAACAGTAGCACCATGAATTGCACATAGTAACGCAGCTCCTAATACTCCAGCAACTC 29130 Query 123348 CCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATAAC 123407 ||||||| || |||||||| ||||| || ||||| ||||||| ||||| | | | | Sbjct 29129 CCATCATATGGAATGGATTTAATGTCCAATTATGGAATCCTTGTAAGAATAGTAAAAATC 29070 Query 123408 GAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGC-TGACCTAGTGGA 123466 |||| |||||||| ||||| || |||||| || ||||| || ||| || |||| ||| Sbjct 29069 GAAAAATTGCTGCAACACCAAAACTTGGTGCAAAAAACCAGCT-TGCTTGCCCTAAAGGA 29011 Query 123467 TAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTAA 123526 || | | ||| | | | || | ||||| || || ||||| | || |||||| Sbjct 29010 TAAAGTAAAAAAACGGAAACAAAAATGGCGATCGGTGCTGAAAATGCTAAAGCATTGTAA 28951 Query 123527 GGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTC-TGAGCATGAAACCTATGAGTCC 123585 |||| ||| ||||| | || || || |||||||||| | |||| || || || ||| | Sbjct 28950 GGTCGAATTCCTACTAATCGAGCAATTTCAAATTGTCGTAAGCA-AAATCCAATTAGTGC 28892 Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCA-ACGAACGA 123644 ||| |||| ||||| || ||||| |||| |||||||| | || ||||| || | | Sbjct 28891 AAAAGCTCCGTGTAAGGCAACAAATGTCCAAAGACCTCCAATTTTAAACCATACAGAAAA 28832 Query 123645 ATGATCCTTGTGCTTCAGGTCCCC--AAAGGAACATGAGACTATGACCCATTGCGTCACC 123702 || |||||| ||||| ||||||| ||| ||| ||| ||| ||||| | | | Sbjct 28831 AT-TTCCTTGCGCTTCTGGTCCCCATAAAAGAAGTAAAGA--ATGTCCCATACTATTAGC 28775 Query 123703 AGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACC 123762 ||||| || || || || ||||| || || || || | | | || || | || Sbjct 28774 TGGTGTTGAAACAGCAGCCGTTAAAAAATTACAACCTTCTAAAAAGGAGCTAGCTAAGCC 28715 Query 123763 ATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATA 123822 ||| |||||||| || ||||| || || |||| ||||| || || | | || ||| Sbjct 28714 ATGGGTATACCAAGAGGTAACAAATGTGATTCCAGTAAACCATCCTCCTAGAGCTAAATA 28655 Query 123823 CGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAA 123882 ||| || || | | ||| | |||||||||||||| |||||||| | ||| | |||| Sbjct 28654 CGCGCACGGAAATAATAATAAACCAGACCATCCTACAAATACAAATCTGTCTTTTTTTAG 28595 Query 123883 CCAGTCGTC 123891 |||||| || Sbjct 28594 CCAGTCATC 28586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578982730855800