Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq100 518 4e-142 seq1301 233 3e-56 seq653 87.8 2e-12 seq1490 86.0 8e-12 >seq100 Length=112360 Score = 518 bits (574), Expect = 4e-142 Identities = 689/957 (72%), Gaps = 0/957 (0%) Strand=Plus/Minus Query 26733 AGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAGACC 26792 ||||||||| ||||| || ||||| || || | ||| || || || || | ||||||| Sbjct 41135 AGCAAGATCTAATGGGAAGTTATGAGCATTACGTTCATGCATTACTTCGATTCCAAGATT 41076 Query 26793 AGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCACAGA 26852 || | ||| | || |||||||||||||| | || | || || |||||| | || Sbjct 41075 TGCTCTGTTTACAATATCTGCCCAAGTGTTAATTACTCTTCCTTGGCTATCAATAATCGA 41016 Query 26853 CTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAA 26912 ||||| ||||| || ||||| | || || ||||| || | || | ||| || || Sbjct 41015 TTGATTAAAGTTAAATCCGTTTAAGTTAAAGGCCATTGTACTAATTCCTAATGCAGTTAA 40956 Query 26913 CCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAA 26972 ||| || ||||| || ||||||||||| | ||||||||| || ||||||||||| || || Sbjct 40955 CCAAATTCCAACTACTGGCCATGCAGCTAAGAAGAAGTGTAATGAACGTGAGTTATTAAA 40896 Query 26973 TGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGT 27032 || ||||| || || || | ||||| || || || || || || || || || || Sbjct 40895 ACTTGCGTATTGAAAAATTAATCTTCCGAAATATCCGTGAGCAGCAACAATATTATATGT 40836 Query 27033 CTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTCACG 27092 ||||||||||| || || || || ||||| || |||| || |||||| || ||||| Sbjct 40835 TTCTTCTTCTTGTCCAAATTTGTATCCATAATTTGGTGATTCGCTTTCAGAAGTTTCACG 40776 Query 27093 GACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATAC 27152 | | ||| || || || | | ||||||||| ||||| || | || || || || || Sbjct 40775 AATAATTGATGAAGTTACTAAAGATCCGTGCATTGCAGAAAATAATGAACCTCCAAAAAC 40716 Query 27153 CCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATAC 27212 ||||| ||||| |||||| || || ||||| | || || || || || ||||| || Sbjct 40715 TCCAGCTACACCAGCCATGTGAAATGGATGCATTAATATGTTATGCTCGGCTTGGAAAAC 40656 Query 27213 AAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTG 27272 | |||| |||||||||| || || || || | ||||||| |||| || ||| ||||| Sbjct 40655 TAACATGAAGTTAAAAGTCCCTGAAATCCCTAAAGGCATACCATCAGAAAAACTTCCTTG 40596 Query 27273 ACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTAC 27332 || | ||||| | | |||||| || | || ||||| |||||||| ||| | || || Sbjct 40595 TCCTATCGGATAAATTAAGAATACAGCTGTTGCTGCAGCTACTGGAGCGGAAAAGGCAAC 40536 Query 27333 ACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATAAGC 27392 | | ||||| || ||||| ||||| ||| | | |||||||||||| || | |||| Sbjct 40535 AAAAATCCAAGGGCGCATTCCTAAGCGAAAGCTTAATTCCCACTCACGACCTAAATAACA 40476 Query 27393 ATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACCA 27452 | | || | | |||||| || |||| |||||| | |||||||||||||| ||||| Sbjct 40475 AGCTACACCTGTTAAGAAGTGTAATACTATCAGTTGATATGGACCACCGTTATATAACCA 40416 Query 27453 CTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACT 27512 ||||| | || || |||||||| || || || || || | ||| ||||| |||||||| Sbjct 40415 TTCATCAATAGAAGCAGCTTCCCATATAGGATAAAAATGAACACCAATTGCGTTTGAACT 40356 Query 27513 TGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTC 27572 || | || || || | ||| |||||||| ||||| | || || ||||| || || || Sbjct 40355 AGGAATAATTGATCCTGTAATAATGTTGTTTCCATATAATAGGGATCCAGCTACTGGCTC 40296 Query 27573 ACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAAGCAGACAGT 27632 ||||| || ||||| || || || || |||||||| || ||| |||||| || ||| Sbjct 40295 GCGAATTCCATCAATGTCTACTGGAGGAGCTGCGATAAAACCGATAATGAAACATGTAGT 40236 Query 27633 TGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGTT 27689 |||| ||| || || || ||||||| || |||||||| |||| || || | ||| Sbjct 40235 AGCTGTTAAAAGCGTAGGAATCATCACAACTCCGAACCATCCAATGTATAATCTGTT 40179 Score = 408 bits (452), Expect = 6e-109 Identities = 643/916 (70%), Gaps = 10/916 (1%) Strand=Plus/Minus Query 23481 TTCAACAAAATATTTTTCGTGTAGAAGGTCTCATACGAA--CC--ATCTTCAGCAGCACG 23536 || || | ||||||||| || ||||| || || ||| || |||||| || || || Sbjct 29496 TTTAAAATAATATTTTTTGTATAGAATGTTTC----GAATTCCGGATCTTCTGCTGCTCG 29441 Query 23537 AATCTCTTGACTCACAAAATCATAAGCACG-AAGATTAAGAGCAAGCCCAATGATGCCAA 23595 | ||||| | ||| ||||| || || ||| |||| ||||| || | || || | Sbjct 29440 TAATTCTTGCGAAATAAAGTCATAGGCGCGTAAGTTTAAT-GCAAGTCCTACAATTCCTA 29382 Query 23596 TAGAAGAGACCCAAAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCT 23655 | | |||| | ||| | ||||||||||| | |||||| ||||| ||||| | | Sbjct 29381 TTGCGCTTGCCCATAAACCGGTTACAGGAACAAATAGCATAAAAAAGTGTAACCATCTTT 29322 Query 23656 TATTGCTAAACGCAACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAAT 23715 ||||| ||| || || || || |||||||||||||| | || ||||||||||| |||| Sbjct 29321 TATTGGAAAAAGCTACTCCAAAAATTTGTGACCAAAATCTGTTGGCTGTAACCATGGAAT 29262 Query 23716 AGGTCTCCTCCTCCTGAGTGGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTT 23775 | || || ||| ||||| | || ||| |||| || ||||| |||||||||| Sbjct 29261 ATGTTTCTTCCGATTGAGTAGGGGTAAAGGCTCTAAATGTATTTGCTGCATCTCCATCTT 29202 Query 23776 CATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTA 23835 |||| || ||||| || |||||| | |||||||| ||| | || | || |||| | || Sbjct 29201 CATAAAGAGTATTTTCAACAGTAGCACCATGAATTGCACATAGTAACGCAGCTCCTAATA 29142 Query 23836 TACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGA 23895 ||||||||||||||||||||||| || || | ||||| ||||| || || || | || Sbjct 29141 CTCCAGCAACTCCCATCATATGGAATGGATTTAATGTCCAATTATGGAATCCTTGTAAGA 29082 Query 23896 AGAGAAGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACT 23955 | || | || | ||||| || |||||||| ||||| || ||||| ||||| || | Sbjct 29081 ATAGTAAAAATCGAAAAATTGCTGCAACACCAAAACTTGGTGCAAAAAACCAGCTTGCTT 29022 Query 23956 GTCCCAAAGGATAGATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAA 24015 | || |||||||| | | || || || || || | || || || | ||||| || | Sbjct 29021 GCCCTAAAGGATAAAGTAAAAAAACGGAAACAAAAATGGCGATCGGTGCTGAAAATGCTA 28962 Query 24016 TCGCATTGTAGGGACGGATTCCAATTAGACGTGCCAGTTCAAACTGACGTAACATAAAAC 24075 |||||||| || || ||||| | || || || | |||||| || ||||| ||| | Sbjct 28961 AAGCATTGTAAGGTCGAATTCCTACTAATCGAGCAATTTCAAATTGTCGTAAGCAAAATC 28902 Query 24076 CTATAAGTGCAAAGGCACCGTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCC 24135 | || |||||||| || ||||| | |||||||| | |||||| ||||||| || | || Sbjct 28901 CAATTAGTGCAAAAGCTCCGTGTAAGGCAACAAATGTCCAAAGACCTCCAATTTTAAACC 28842 Query 24136 ACCGTTGAAAGTCCCCTTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAG 24195 | ||| | ||||| | || || ||||| | ||||| | |||||| |||||| Sbjct 28841 ATACAGAAAAATTTCCTTGCGCTTCTGGTCCCCATAAAAGAAGTAAAGAATGTCCCATAC 28782 Query 24196 CGTCAGCAGGCGTCGAGACAGCTGCCGTAAGAAAGTTAGCACCCTCAAGATAGGAACTAG 24255 | ||| || || || ||||| ||||| | ||| ||| ||| || | | |||| |||| Sbjct 28781 TATTAGCTGGTGTTGAAACAGCAGCCGTTAAAAAATTACAACCTTCTAAAAAGGAGCTAG 28722 Query 24256 CAAGTCCATGGGTGTACCAACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGG 24315 | | |||||||| |||||| |||||||| | | ||||||| ||| || || | | Sbjct 28721 CTAAGCCATGGGTATACCAAGAGGTAACAAATGTGATTCCAGTAAACCATCCTCCTAGAG 28662 Query 24316 CAAGATAAGCAGTGGGAAGAAGTAGGAGTCCAGACCAACCCACAAAGACAAAGCGATCCC 24375 | | ||| || |||| | || | |||||||| || ||||| ||||| | || Sbjct 28661 CTAAATACGCGCACGGAAATAATAATAAACCAGACCATCCTACAAATACAAATCTGTCTT 28602 Query 24376 GTTTAACCCAGTCGTC 24391 ||| | |||||| || Sbjct 28601 TTTTTAGCCAGTCATC 28586 >seq1301 Length=515170 Score = 233 bits (258), Expect = 3e-56 Identities = 411/595 (69%), Gaps = 8/595 (1%) Strand=Plus/Minus Query 47791 GTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACA 47850 |||| || ||||| || | |||||||||||||| | ||| |||||||| | || || Sbjct 132371 GTGGAAAGGACAAAGTCTTGTGGTTCTTCTTGTTGTAACATCAACCACATTCCTTCAACG 132312 Query 47851 TAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAGTCT 47910 ||||| | ||||| ||||||||||| ||||| | ||| || | ||| ||||| || Sbjct 132311 TAATCACGTGCATGACCCCAGTCACGTTTAGCATCCAAATTACCCAAATACAAACAATCA 132252 Query 47911 TGCTTACCTTCAGAG--ATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTT 47968 || || || | ||| | | ||| | ||||||| | || |||||||| Sbjct 132251 --CTCACTCCCAAATGAATTTCAGCCACTGCACGACTAATCTTTCTGGTAACAAAAGTGC 132194 Query 47969 CACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATG 48028 |||||| | || ||||||||| ||||| || ||| |||| || |||||||||| | Sbjct 132193 GACCACGACGAGGGCTTTCATGATTGAAAAGGATTCCATTACAAGCGAACATTCCGTAAG 132134 Query 48029 ATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAAC 48088 ||| || || || |||| ||||| || || | ||| ||||| || |||||||||| Sbjct 132133 CTTCTCGGTAATTGATTACAATCCAATAAGAGTACATTTTGGCAACCCCGTAAGGAGAAC 132074 Query 48089 GTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCAC 48148 |||||||||| || || || || | || || || || || ||||| || | |||| Sbjct 132073 GTGGATAGAAGGGAGTAGTTTCACTTTGAGGCGTTTCAACTACTTTACCGTACAATTCAG 132014 Query 48149 TGGTGGATGCTTGATAGATACGAACCCTATCTTCCAT--CTCAAGCAAACGGACTGCCTC 48206 |||||||||||||| | |||||| | |||||| | ||||| | || || || Sbjct 132013 AAGTGGATGCTTGATAAAAACGAACTTCCTTTTCCATTCCACAAGC--CCTGATGGCATC 131956 Query 48207 AAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTCAAACGA 48266 ||| | | ||| || |||| ||||| | ||||||||||||| ||| ||||| Sbjct 131955 AAGTAAACGCAGCGTTCCTAAAGCATCAACTTCTCCAGTATACTCGGCCATTTCAAAACT 131896 Query 48267 AACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGTTGAACCTGCTGAAT 48326 ||| || || ||||| ||||| || | ||| |||| ||| ||| |||||| ||| Sbjct 131895 AACTTTGACGTGACTTTGTGCTCCCAAATTGTAAACTTCAGTTGGACGAACCTTGGAAAT 131836 Query 48327 AACCCTCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCAATTTTAATTGA 48381 || | || ||| | ||| || || || || || ||||| | | ||| ||| Sbjct 131835 AATTCCAACCAAACAAGAAGAATCAGTCAAATCACCGTAATGAAGGTATAAATGA 131781 >seq653 Length=1731 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTA-CCAAC 53799 |||||||||||||| ||||||||||||| ||| | ||||| ||||| |||||| ||| | Sbjct 448 TGGAGAATAACGGATTCGAACCGTTGACCCCCTGCGTGCAAGGCAGGTGCTCTAGCCAGC 389 Query 53800 TGAGCTAATTCCCCAATCGG 53819 ||||||||| |||| |||| Sbjct 388 TGAGCTAATCCCCCTTTCGG 369 >seq1490 Length=214893 Score = 86.0 bits (94), Expect = 8e-12 Identities = 110/152 (72%), Gaps = 10/152 (7%) Strand=Plus/Minus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTACCAACT 53800 ||||| ||||||| ||||||||||||| ||| ||||||||||||| ||||| ||| || Sbjct 76361 TGGAGGATAACGGGATCGAACCGTTGACCCCCTGCTTGCAAAGCAGGTGCTCTCCCAGCT 76302 Query 53801 GAGCTAATTCCCCAA--------TCGGGGTGGCAGGGATCGAACCTGCGACCCTCGCTTC 53852 ||||||| |||| | | || ||| ||| ||||||| |||||| ||| | Sbjct 76301 GAGCTAAACCCCCGAAACCTTGGTGGGTCTGGTTGGGCTCGAACCAACGACCCCCGCGTT 76242 Query 53853 CCAAAAACGATGCGCTA--CCTCTGCGCTACA 53882 || ||| ||| ||| | ||| |||||| Sbjct 76241 ATCAACACGGTGCTCTAACCAGCTGAGCTACA 76210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665476390057800