Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1301 212 7e-50 seq1526 100 3e-16 >seq1301 Length=515170 Score = 212 bits (234), Expect = 7e-50 Identities = 1051/1652 (64%), Gaps = 45/1652 (3%) Strand=Plus/Minus Query 75297 AAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTAC--ACCAAGACCGCA 75354 || |||| || | ||||| |||| ||||||||| |||| ||||| | || || || Sbjct 333123 AAAGTATTTT-ACTCACGGTTCACCCACCCTCTTCCATGCCGGTACTAATCAT--CCTCA 333067 Query 75355 GATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAAC 75414 |||| ||||||| | | | | || ||||| || | ||||| |||| ||| Sbjct 333066 ACTGTCTTCTTGCTTCTTGTTGACGATGTCTGATGACTCGATTGATGGTATTTATGAAAC 333007 Query 75415 TCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGA 75474 | | | | ||||| || || || | ||||| |||||||| || |||| || | Sbjct 333006 TTTAAAGACTTGTGCTTTGATTTCCAAATCTGCTGGTGGTATTGGTTTGAACATTCACAA 332947 Query 75475 TGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCC 75534 | | || | || ||| || || ||||||||||| ||||| || |||| Sbjct 332946 CATTCGTGCTGCTGGTTCGTACATTTCTGGCACGAATGGTCAATCCAATGGTCTTGTTCC 332887 Query 75535 AATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGG------GCGTCG 75588 |||||||| || | || ||| || || || || |||||| || ||||| Sbjct 332886 CATGCTTCGTGTTTACAATAACACGGCTCGTTACGTTGATCAAGGTGGTAATAAGCGTCC 332827 Query 75589 CAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGA 75648 ||| | | || |||||||||||||| ||||| || || | | || || | || Sbjct 332826 ---GGGTGCTTTTGCCGTCTACTTGGAACCGTGGCACGCTGACGTTTTTGACTTTTTGGA 332770 Query 75649 GTT-ACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGT 75707 || | || ||| || | ||||| | ||| | | || | || | | ||| Sbjct 332769 TTTGAAGAAG-AACACTGGGAAGGAAGAAGTTCGTGCTCGTGACTTGTTCTATGCTTTGT 332711 Query 75708 GGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTC 75767 ||||| || | ||||||||||| ||||| | | | | ||||| || ||||| | Sbjct 332710 GGATTAATGATTTGTTCATGAAGCGTGTTGAAGCTGACGAAGACTGGTCCCTCTTCTGCC 332651 Query 75768 CAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAA 75827 || | | || ||| | || || | ||||| || |||||||| || ||| | Sbjct 332650 CAAATGAATGTCCTGGTTTGTCTGATGTTTGGGGTGCTGAATTTGAAGCTCTTTACGAGA 332591 Query 75828 AGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTA 75887 |||| ||| | || ||| || | ||| | || | ||||||| |||| Sbjct 332590 AGTACGAAAATGAAGGTCATGCTCGTCGTGTTGTTCGTGCTCAAAAGCTTTGGAATGCTA 332531 Query 75888 TTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACA 75947 || | |||| || || ||||| || || || ||||| |||||||||||||| || Sbjct 332530 TTTTGGAATCTCAAGTTGAAACTGGTACTCCTTACATGCTGTACAAGGATGCTTGCAATT 332471 Query 75948 AGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTT 76007 ||||| || ||| | || |||||||| ||||| | || ||| | || || |||||| Sbjct 332470 CCAAGAGCAATCAACAAAACTTGGGAACCATCAAATGTTCCAATTTGTGTACTGAAATTG 332411 Query 76008 TAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAA 76067 | || ||| | | | ||||||| ||||||||||||||||| || || || | || Sbjct 332410 TTGAATACTCGGCTCCTGATGAGATTGCTGTTTGCAATTTGGCTTCTATTGCTTTGCCTG 332351 Query 76068 AGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTT----CATGAAATCACA 76123 | |||||| || ||| ||||||||||| | ||| | || |||| | | Sbjct 332350 CCTTTGTCAAGGATAAGA---ACACTTTTGATT-TCAAAGAATTGAAACATG---TTGCC 332298 Query 76124 AAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACT 76183 ||| |||| ||||| || | || || |||||||| |||| ||| || ||||| Sbjct 332297 AAGGTTGTCACCAAGAACTTGAATCGTATCATTGACGTCAATTATTACCCAGTTGAACAG 332238 Query 76184 GCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGAT 76243 || || ||||||||||| || | || |||||| | || |||||||| | || ||| Sbjct 332237 GCTCGTCGTTCTAATATGCGTCATCGTCCCATTGGTATTGGAGTTCAAGGATTAGCTGAT 332178 Query 76244 GTATTTATTTTG-TGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCG 76302 | || ||| || ||| | | ||||||||| || || | ||||| | Sbjct 332177 GCTTTCATTCTGATGCGAATGC-CATTTGATTGTGAACGCGCTCGTCAATTGAATAAGCA 332119 Query 76303 TATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCA 76362 |||||||| ||||| || | | || |||| || ||||||||||||| || | Sbjct 332118 AATCTTTGAGACCATCTACTATGGTGCCTTGGAAGCTTCTTGTGAATTGGCTCAAATTGA 332059 Query 76363 AGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATAT 76422 ||| |||| | || | |||| || | | | | || || | || | ||| || Sbjct 332058 AGGACACTATCAAACTTACCCGGGTAGCCCTGTGAGCAAGGGTGTTTTGCAATATGACAT 331999 Query 76423 GTGGGAAGGTGAAACCAAGC-TCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGG 76481 || |||| |||| || | | | || ||| | | | |||| || | Sbjct 331998 GT-GGAATGTGACCCCTTCCGACTTGTGGGATTGGTCAGCTTTGAAGGCTAAGATTTCTG 331940 Query 76482 AGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAA 76541 | | ||| ||||||| | || | || || ||||| || || || ||| | |||| Sbjct 331939 AACATGGTGTTCGTAATTCCTTGTTACTTGCTCCCATGCCGACTGCTTCTACCTCTCAAA 331880 Query 76542 TCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCC 76601 | | ||| | |||||||||||||| || | ||| | ||||| ||| | | Sbjct 331879 TTCTTGGTTACAATGAATGCTTTGAGCCTTTCACTTCCAACATTTACACTCGTCGTGTTT 331820 Query 76602 TCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTC 76661 | || ||||| || |||||||| | || | | || || | | | ||||| Sbjct 331819 TAGCTGGTGAATTCCAAATTGTCAATCAATACTTGATGAAGGATTTGACTGA-ATTGGGA 331761 Query 76662 TCTGGTCCAAGGAT--ATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATA- 76718 | || | | || |||||| ||| ||| | ||||||||||| | ||||| | Sbjct 331760 T-TGTGGAATGAATCCATGAAGAATCGCATCATTGCTGCGGGTGGTTCAGTACAAAAGAT 331702 Query 76719 TCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAA----TCAAG 76774 || ||| ||||| | || | ||| | | ||| ||||| ||||||| |||| Sbjct 331701 TCCCAG-CATCCCGCAAGAATTGAAGGACTTGTACAAGACAGTTTGGGAAATTTCTCAA- 331644 Query 76775 ATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT 76834 |||| | |||||| |||| || ||||||||| ||||||||||||||||||||| Sbjct 331643 ---AAAGTCATTATTGACTTGGCTGCTGATCGTGGTGCTTTCATTGATCAAAGTCAAAGT 331587 Query 76835 ATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCG 76894 |||| | ||| | ||||| | || ||| | |||| |||||| | |||| Sbjct 331586 TTGAACATTCACATTGCCGAACCAACCTTTTCGAAGTTGACTTCAATGCATTTTTACGGT 331527 Query 76895 TGGAAACAGGGGCTCAAAACCGGAATGTACTA 76926 ||||| | || | || || || ||||| || Sbjct 331526 TGGAAGCTTGGTTTGAAGACTGGTATGTATTA 331495 Score = 95.1 bits (104), Expect = 1e-14 Identities = 241/363 (66%), Gaps = 3/363 (1%) Strand=Plus/Minus Query 177616 TCTTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCT 177675 ||||||||||| | ||| | |||||| ||||||| || || |||||||||||||| Sbjct 132347 TCTTCTTGTTGTAACATCAACCACATTCCTTCAACGTAATCACGTGCATGACCCCAGTCA 132288 Query 177676 CTGGCAGCGTTGAGGTTACCGAGTT-CAAGGAACTCTCTCTCACCTTTCACAATTTGTTT 177734 | ||| | | ||||| | | ||| || || ||| | || ||||| Sbjct 132287 CGTTTAGCATCCAAATTACCCAAATACAAACAA-TCACTCACTCCCAAATGAATTTCAGC 132229 Query 177735 GACGCCATCAGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTT 177794 || || | ||||||| | || ||||| | ||| || | || ||| || || Sbjct 132228 CACTGCACGACTAATCTTTCTGGTAACAAAAGTGCGACCACGACGAGGGCTTTCATGATT 132169 Query 177795 GAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCA 177854 ||| |||||||| || || |||| || || | |||||||||||| | || | ||| Sbjct 132168 GAAAAGGATTCCATTACAAGCGAACATTCCGTAAGCTTCTCGGTAATTGATTACAATCCA 132109 Query 177855 GTGAGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGT 177914 | || | || ||||| || || || || ||||| |||||||| || ||| | Sbjct 132108 ATAAGAGTACATTTTGGCAACCCCGTAAGGAGAACGTGGATAGAAGGGAGTAGTTTCACT 132049 Query 177915 TTGTGGAGTTTCTCGGACTTTACCAAACATCTCCGAAGTTGAGGCTTGGTATACACGATA 177974 ||| || ||||| |||||||| ||| || ||||| || ||||| || | |||| | Sbjct 132048 TTGAGGCGTTTCAACTACTTTACCGTACAATTCAGAAGTGGATGCTTGATAAAAACGA-A 131990 Query 177975 CTT 177977 ||| Sbjct 131989 CTT 131987 >seq1526 Length=132622 Score = 100 bits (110), Expect = 3e-16 Identities = 151/210 (72%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGACA--CAAAGTCTCGCTCCTTCGCCGAGC 65080 ||||||| | ||||| ||| ||| |||| | |||| || ||| || | || | Sbjct 118897 AAGAAGGGAGACTGGGCTATGCGTTGGATTGAAAATCAAA--CTAGCTGTTTTGGAGAAC 118840 Query 65081 GCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATT 65139 ||||| |||| ||||| ||||| ||||||||||| ||||| ||||| ||| || ||| Sbjct 118839 GCCTTGTTGCTTTTGCTGCCGTGGAAGGTATCTTCTTTTCCGGTTCATT-TGCTGCCATT 118781 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199 | |||||||||||||| || | ||||| || | |||||| |||||||| || | Sbjct 118780 TTCTGGTTGAAGAAGCGCGGGTTGATGCCCGGTTTGACCTTCTCCAATGAACTAATCAGC 118721 Query 65200 CGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || || || ||||| || || |||||| Sbjct 118720 CGTGACGAAGGTCTTCATTGTGATTTTGCC 118691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596553455335200