Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq100 515 5e-141 >seq100 Length=112360 Score = 515 bits (570), Expect = 5e-141 Identities = 697/969 (72%), Gaps = 2/969 (0%) Strand=Plus/Minus Query 7897 TCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTTGCTCTG 7956 |||||||||||||| || ||||| | ||||||||| ||||| || || | ||||||||| Sbjct 41128 TCTAATGGGAAGTTATGAGCATTACGTTCATGCATTACTTCGATTCCAAGATTTGCTCTG 41069 Query 7957 TTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGATTGGTTA 8016 |||| | || |||| || ||| | | | || | ||||| || ||||| ||| Sbjct 41068 TTTACAATATCTGCCCAAGTGTTAATTACTCTTCCTTGGCTATCAATAATCGATTGATTA 41009 Query 8017 AAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAACA 8076 |||||||||||||| | |||||| |||||||| | ||| || | | ||||||||||| Sbjct 41008 AAGTTAAATCCGTTTAAGTTAAAGGCCATTGTACTAATTCCTAATGCAGTTAACCAAATT 40949 Query 8077 CATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAAACGATGCA 8136 | || ||||| ||| ||| | ||||||||| | | ||| ||||| ||| Sbjct 40948 CCAACTACTGGCCATGCAGCTAAGAAGAAGTGTAATGAACGTGAGTTATTAAAACTTGCG 40889 Query 8137 TACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCT 8196 || || || |||||||| || || ||||| |||||||||||||||||||| || |||||| Sbjct 40888 TATTGAAAAATTAATCTTCCGAAATATCCGTGAGCAGCAACAATATTATATGTTTCTTCT 40829 Query 8197 TCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGA 8256 ||||| ||||| || || ||||| || | || || ||||| || || | || | Sbjct 40828 TCTTGTCCAAATTTGTATCCATAATTTGGTGATTCGCTTTCAGAAGTTTCACGAATAATT 40769 Query 8257 GAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCT 8316 || || || |||||||| |||||||| ||| || | ||| || || || | || ||| Sbjct 40768 GATGAAGTTACTAAAGATCCGTGCATTGCAGAAAATAATGAACCTCCAAAAACTCCAGCT 40709 Query 8317 ACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATG 8376 || || ||||| || || |||||||| | ||||||||||| |||||||| || |||||| Sbjct 40708 ACACCAGCCATGTGAAATGGATGCATTAATATGTTATGCTCGGCTTGGAAAACTAACATG 40649 Query 8377 AAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAAT 8436 |||||||| || || ||||| |||| |||||| |||||||| || || || || | Sbjct 40648 AAGTTAAAAGTCCCTGAAATCCCTAAAGGCATACCATCAGAAAAACTTCCTTGTCCTATC 40589 Query 8437 GGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATC 8496 ||||| | |||||| || || || |||| ||||||||| | | || ||| | ||| Sbjct 40588 GGATAAATTAAGAATACAGCTGTTGCTGCAGCTACTGGAGCGGAAAAGGCAACAAAAATC 40529 Query 8497 CATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATT 8556 || || | ||| |||||||| | ||| ||||||| | ||| | ||| || | Sbjct 40528 CAAGGGCGCATTCCTAAGCGAAAGCTTAATTCCCACTCACGACCTAAATAACAAGCTACA 40469 Query 8557 CCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCT 8616 || | | |||||| || | | || ||||||||||| |||||||| ||||| ||||| Sbjct 40468 CCTGTTAAGAAGTGTAATACTATCAGTTGATATGGACCACCGTTATATAACCATTCATCA 40409 Query 8617 AATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACG 8676 | | ||||||||||| || ||||| || || | ||||| ||||| ||| |||| Sbjct 40408 ATAGAAGCAGCTTCCCATATAGGATAAAAATGAACACCAATTGCGTTTGAACTAGGAATA 40349 Query 8677 ACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATA 8736 | | || | || |||||||||||||| | | || || || || || || ||||| Sbjct 40348 ATTGATCCTGTAATAATGTTGTTTCCATATAATAGGGATCCAGCTACTGGCTCGCGAATT 40289 Query 8737 CCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCT 8796 || || || || || || ||||| || ||||| | | || || || |||| ||| | | Sbjct 40288 CCATCAATGTCTACTGGAGGAGCTGCGATAAAACCGATAATGAAACATGTAGTAGCTGTT 40229 Query 8797 AACAAGC-AAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTTGTACT 8855 || |||| ||||||||| | |||||| ||||| || | || | |||||| | | ||| Sbjct 40228 AA-AAGCGTAGGAATCATCACAACTCCGAACCATCCAATGTATAATCTGTTTTCTAAACT 40170 Query 8856 TGTAACCCA 8864 |||| ||| Sbjct 40169 AGTAATCCA 40161 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/153 (75%), Gaps = 4/153 (3%) Strand=Plus/Plus Query 7897 TCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTTGCTCTG 7956 |||||||| ||||| || ||||| | ||||||||| ||||| || || | ||||||||| Sbjct 112206 TCTAATGG-AAGTTATGAGCATTACGTTCATGCATTACTTCGATTCCAAGATTTGCTCTG 112264 Query 7957 TTTA-ATACGTC-ACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGATTGGT 8014 |||| ||| || |||| || ||| | | | || | ||||| || ||||| | Sbjct 112265 TTTACATATATCTGGCCCAAGTGTTAATTACTCTTCCTTGGCTATCAATAATCGATTGAT 112324 Query 8015 TAAAGTTAAATCCG-TTAAGGTTAAATGCCATT 8046 |||||||||||||| ||||| | ||| |||||| Sbjct 112325 TAAAGTTAAATCCGTTTAAGTTAAAAGGCCATT 112357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615845733223800