Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq100 502 3e-137 seq1490 82.4 9e-11 >seq100 Length=112360 Score = 502 bits (556), Expect = 3e-137 Identities = 667/926 (72%), Gaps = 0/926 (0%) Strand=Plus/Plus Query 165827 TGATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATCGCTGCTC 165886 |||||||||| || || || |||| |||| || ||||| ||| || ||||| |||| Sbjct 40210 TGATGATTCCTACGCTTTTAACAGCTACTACATGTTTCATTATCGGTTTTATCGCAGCTC 40269 Query 165887 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACA 165946 | || || ||||| || || || || || || || ||||| || || | ||||| |||| Sbjct 40270 CTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCTGGATCCCTATTATATGGAAACA 40329 Query 165947 ACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCA 166006 |||| || | || || || |||| ||| |||||||||||| | || || ||||| | Sbjct 40330 ACATTATTACAGGATCAATTATTCCTAGTTCAAACGCAATTGGTGTTCATTTTTATCCTA 40389 Query 166007 TCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTG 166066 | |||||||| || || |||| |||||| | |||||||||||||| | |||||| | | Sbjct 40390 TATGGGAAGCTGCTTCTATTGATGAATGGTTATATAACGGTGGTCCATATCAACTGATAG 40449 Query 166067 TCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACC 166126 | || |||||| | | || | | || | ||||||||||||||| | | | Sbjct 40450 TATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGTCGTGAGTGGGAATTAAGCTTTC 40509 Query 166127 GTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTG 166186 | |||| ||||| || ||||| | |||||| | || || ||||| ||||| || | | Sbjct 40510 GCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCCGCTCCAGTAGCTGCAGCAACAG 40569 Query 166187 CAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAA 166246 | |||||| || | ||||| | || ||||| ||||| ||||||| ||||| | || | Sbjct 40570 CTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTTTCTGATGGTATGCCTTTAGGGA 40629 Query 166247 TCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATC 166306 | ||||| || || |||| |||||| || |||||||| ||||| || || | ||||||| Sbjct 40630 TTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCCGAGCATAACATATTAATGCATC 40689 Query 166307 CCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACG 166366 | || || ||| || || ||||| || ||||| || || ||| ||| ||||||| Sbjct 40690 CATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGTTCATTATTTTCTGCAATGCACG 40749 Query 166367 GAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACG 166426 || ||| || ||||| || | || | || || |||||| |||||| | ||| || | Sbjct 40750 GATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCTGAAAGCGAATCACCAAATTATG 40809 Query 166427 GTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCG 166486 | ||||| || |||||||||||||||||||| || || || || ||||| || || |||| Sbjct 40810 GATACAAATTTGGACAAGAAGAAGAAACATATAATATTGTTGCTGCTCACGGATATTTCG 40869 Query 166487 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTG 166546 | | || || || |||||||| || || ||||| || || || ||||||||| | | Sbjct 40870 GAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCACGTTCATTACACTTCTTCTTAG 40929 Query 166547 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 166606 |||||||||| || || || || ||||| || || | || | || ||||| || | Sbjct 40930 CTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATTAGGAATTAGTACAATGGCCTTTA 40989 Query 166607 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 166666 || | ||||| || ||||| || || || || ||||| | || || | || | |||| Sbjct 40990 ACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCAAGGAAGAGTAATTAACA 41049 Query 166667 CCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACG 166726 | ||||||||| || | ||| | || ||| || || ||||| |||||||| ||||| | Sbjct 41050 CTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAATCGAAGTAATGCATGAACGTAATG 41109 Query 166727 CACACAACTTCCCCCTCGACCTCGCT 166752 | || |||||||| | || || ||| Sbjct 41110 CTCATAACTTCCCATTAGATCTTGCT 41135 Score = 417 bits (462), Expect = 9e-112 Identities = 702/1005 (70%), Gaps = 8/1005 (1%) Strand=Plus/Plus Query 167026 GATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGACTTCTTCTT-TT 167084 ||||||||||| |||| || | ||||| ||||| || |||||||| || || || || Sbjct 28586 GATGACTGGCTAAAAAAAGACAGATTTGTATTTGTAGGATGGTCTGGT-TTATTATTATT 28644 Query 167085 TCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTG 167144 ||| || ||| | ||| | || || ||| ||||||| | || || || || ||| Sbjct 28645 TCCGTGCGCGTATTTAGCTCTAGGAGGATGGTTTACTGGAATCACATTTGTTACCTCTTG 28704 Query 167145 GTATACTCATGGACTCGCGTCCAGTTATCTTGAGGGTGCGAACTTTCTTACTGCGGCAGT 167204 |||||| ||||| | || | | | | || ||| || ||| | || || || || Sbjct 28705 GTATACCCATGGCTTAGCTAGCTCCTTTTTAGAAGGTTGTAATTTTTTAACGGCTGCTGT 28764 Query 167205 TAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATGGGGTCCTGAATCTCA 167264 | || ||||| || |||||| ||||||||||||||| ||||||| || ||| | || Sbjct 28765 TTCAACACCAGCTAATAGTATGGGACATTCTTTACTTCTTTTATGGGGACCAGAAGCGCA 28824 Query 167265 AGGGGATTTCGTCAG-GTGGCTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACG 167323 ||| |||| || | ||| | || |||| || || ||| | ||||| || | |||| Sbjct 28825 AGGAAATTT-TTCTGTATGGTTTAAAATTGGAGGTCTTTGGACATTTGTTGCCTTACACG 28883 Query 167324 GAGCCTTTGCTCTCATTGGTTTCATGCTT-CGACAGTTTGAACTTGCTCGCCTGATTGGT 167382 |||| ||||| || ||||| || ||||| ||||| |||||| ||||||| | | || Sbjct 28884 GAGCTTTTGCACTAATTGGATT-TTGCTTACGACAATTTGAAATTGCTCGATTAGTAGGA 28942 Query 167383 ATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTTTTC 167442 || || || ||||||||| | || || || | || || || | || ||| |||||| Sbjct 28943 ATTCGACCTTACAATGCTTTAGCATTTTCAGCACCGATCGCCATTTTTGTTTCCGTTTTT 29002 Query 167443 CTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGCC 167502 | || ||||| | || ||| |||||||| ||||| || || || || || || Sbjct 29003 TTACTTTATCCTTTAGGGCAAGCAAGCTGGTTTTTTGCACCAAGTTTTGGTGTTGCAGCA 29062 Query 167503 ATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATTTCAT 167562 || || ||||| | || ||| | ||||||||||| || |||||| | |||||||| ||| Sbjct 29063 ATTTTTCGATTTTTACTATTCTTACAAGGATTCCATAATTGGACATTAAATCCATTCCAT 29122 Query 167563 ATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTTACA 167622 |||||||| || || || | | || | ||| || || | |||||| ||||||| ||| Sbjct 29123 ATGATGGGAGTTGCTGGAGTATTAGGAGCTGCGTTACTATGTGCAATTCATGGTGCTACT 29182 Query 167623 GTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAAGGCATTCGATTCT 167682 || || |||||| | ||||||||||| || |||||| || |||| || || || Sbjct 29183 GTTGAAAATACTCTTTATGAAGATGGAGATGCAGCAAATACATTTAGAGCCTTTACCCCT 29242 Query 167683 ACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTCAGATCTTC 167742 ||||| ||||| || ||||| ||||||||||| ||| |||| ||||| || || || Sbjct 29243 ACTCAATCGGAAGAAACATATTCCATGGTTACAGCCAACAGATTTTGGTCACAAATTTTT 29302 Query 167743 GGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTCGTTCCCGTTATG 167802 || | ||||| ||| ||| | ||| | || || |||||| |||| ||||| || | Sbjct 29303 GGAGTAGCTTTTTCCAATAAAAGATGGTTACACTTTTTTATGCTATTTGTTCCTGTAACC 29362 Query 167803 GGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCTT-CGTGCTTACGA 167861 || | ||| || | || || || | || || || |||| ||| || || || || Sbjct 29363 GGTTTATGGGCAAGCGCAATAGGAATTGTAGGACTTGC-ATTAAACTTACGCGCCTATGA 29421 Query 167862 TTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAACTTTCTATACTAA 167921 || |||| ||||| | |||| || || ||||| || || ||||| |||||||| || Sbjct 29422 CTTTATTTCGCAAGAATTACGAGCAGCAGAAGATCCGGAATTCGAAACATTCTATACAAA 29481 Query 167922 AAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCGATCAACCTCATGA 167981 ||| || || | |||||||| | || |||| | || | || || || ||||| Sbjct 29482 AAATATTATTTTAAATGAAGGAATAAGATTATGGATGGCTGCACAAGACCAGCCACATGA 29541 Query 167982 GAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACT 168026 || | | | || ||||| || || | ||||| || ||||| || Sbjct 29542 AAATTATATATTTCCAGAAGAGGTATTACCACGTGGAAACGCGCT 29586 >seq1490 Length=214893 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 18007 tCGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 18066 |||||| ||||||||| ||| ||||| ||||||||||||||||| |||| |||||||| Sbjct 76287 TCGGGGGTTTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCAACGGTTCGA 76346 Query 18067 GTCCGCTATTCTCCA 18081 ||| ||| ||||| Sbjct 76347 TCCCGTTATCCTCCA 76361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561232811226000