Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq100 499 9e-137 >seq100 Length=112360 Score = 499 bits (552), Expect = 9e-137 Identities = 675/941 (72%), Gaps = 0/941 (0%) Strand=Plus/Plus Query 41276 GGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGCCGCTACAACTTGTTTTATTATC 41335 |||||||||||||| | |||||||| || | | ||||| || ||||| |||||| Sbjct 40194 GGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACTACATGTTTCATTATC 40253 Query 41336 GCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCC 41395 | ||| | | || || || || ||||| |||||||| || || || || ||||| ||| Sbjct 40254 GGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCTGGATCC 40313 Query 41396 CTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGA 41455 || || ||||| |||||||| || ||||| | | |||| || || || || || Sbjct 40314 CTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCAATTGGT 40373 Query 41456 CTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGT 41515 | || || || || || |||||||||||| | ||||||||||| | || ||||| ||| Sbjct 40374 GTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAACGGTGGT 40433 Query 41516 CCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAG 41575 |||| ||||| | ||||| |||||| | | || || | ||| | || || ||| Sbjct 40434 CCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGTCGTGAG 40493 Query 41576 TGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCT 41635 |||||| | |||| ||| |||| ||| | || ||||| |||||||| | || ||||| Sbjct 40494 TGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCCGCTCCA 40553 Query 41636 GTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGAT 41695 || || || || || ||||| ||| | |||||||| | ||||| || |||||||||| Sbjct 40554 GTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTTTCTGAT 40613 Query 41696 GCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCAC 41755 | |||||| || ||||| || || || || |||| |||| | || ||||| || ||||| Sbjct 40614 GGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCCGAGCAT 40673 Query 41756 AATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTG 41815 || || | |||||||| ||||||||| ||||| || || || ||||| || || Sbjct 40674 AACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGTTCATTA 40733 Query 41816 TTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAG 41875 || ||||| |||||||| | || || || ||| | |||||||| || ||||| Sbjct 40734 TTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCTGAAAGC 40793 Query 41876 GTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCT 41935 | |||| || ||||| ||||| ||||| ||||| ||||| || || |||||||||||| Sbjct 40794 GAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATATTGTTGCT 40853 Query 41936 GCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGT 41995 |||||||| ||||| || | | || || ||||| || || |||||||| || ||| Sbjct 40854 GCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCACGTTCA 40913 Query 41996 CTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTG 42055 | || ||||| | ||||| ||||| || || || |||||||| |||| | || | Sbjct 40914 TTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATTAGGAATT 40973 Query 42056 TCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGAT 42115 ||| ||||| || ||||| || || || |||||||| ||||| | | | | | Sbjct 40974 AGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCAA 41033 Query 42116 GGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTG 42175 ||| || || ||||| ||||| || ||| | ||| | || || ||||| | || || Sbjct 41034 GGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAATCGAAGTA 41093 Query 42176 ATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216 |||||||| || || || || |||||||| | || ||||| Sbjct 41094 ATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGC 41134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146210640919160