Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq100 542 8e-150 >seq100 Length=112360 Score = 542 bits (600), Expect = 8e-150 Identities = 713/983 (73%), Gaps = 4/983 (0%) Strand=Plus/Minus Query 25888 TGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTAGCTCGGTTTAA 25947 ||| ||||||||||||||||| || ||||| ||||| | || || || |||| ||||| Sbjct 41123 TGGGAAGTTATGAGCATTACGTTCATGCATTACTTCGATTCCAAGATTTGCTCTGTTTAC 41064 Query 25948 TACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGACTGGTTAAAGTT 26007 | ||| ||||| || |||| |||| | ||| | | || || |||||||| Sbjct 41063 AATATCTGCCCAAGTGTTAATTACTCTTCCTTGGCTATCAATAATCGATTGATTAAAGTT 41004 Query 26008 AAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCAAC 26067 ||| || |||| |||||| |||||||| | || || | | || | ||| || ||||| Sbjct 41003 AAATCCGTTTAAGTTAAAGGCCATTGTACTAATTCCTAATGCAGTTAACCAAATTCCAAC 40944 Query 26068 AACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTG 26127 || ||||| | ||| | ||||| || | ||||| |||||||||||| || || || Sbjct 40943 TACTGGCCATGCAGCTAAGAAGAAGTGTAATGAACGTGAGTTATTAAAACTTGCGTATTG 40884 Query 26128 AAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTG 26187 |||||||||||| || || || ||||| ||||| |||||||||||||| ||||| ||||| Sbjct 40883 AAAAATTAATCTTCCGAAATATCCGTGAGCAGCAACAATATTATATGTTTCTTCTTCTTG 40824 Query 26188 CCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAGGA 26247 ||||| || || |||||||| |||| | || | ||||| ||||| ||| || Sbjct 40823 TCCAAATTTGTATCCATAATTTGGTGATTCGCTTTCAGAAGTTTCACGAATAATTGATGA 40764 Query 26248 AGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACC 26307 ||| || ||| ||||||||| |||| || | | || || ||||| ||||| ||||| Sbjct 40763 AGTTACTAAAGATCCGTGCATTGCAGAAAATAATGAACCTCCAAAAACTCCAGCTACACC 40704 Query 26308 AGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTT 26367 |||||| || ||||| ||||| | ||| ||||| || |||||||| || ||||| ||||| Sbjct 40703 AGCCATGTGAAATGGATGCATTAATATGTTATGCTCGGCTTGGAAAACTAACATGAAGTT 40644 Query 26368 AAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATA 26427 |||||| || || || || | |||||| |||||| |||||| |||||||| | ||||| Sbjct 40643 AAAAGTCCCTGAAATCCCTAAAGGCATACCATCAGAAAAACTTCCTTGTCCTATCGGATA 40584 Query 26428 AACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGG 26487 || |||||| || || ||||| | || ||| || | | | |||||||| ||||| || Sbjct 40583 AATTAAGAATACAGCTGTTGCTGCAGCTACTGGAGCGGAAAAGGCAACAAAAATCCAAGG 40524 Query 26488 TCTCATTCCTAGTCTGTAAGAT-AGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCTA 26546 | |||||||| | | ||| | | |||||||| | ||| ||| ||||| ||| Sbjct 40523 GCGCATTCCTAAGC-GAAAGCTTAATTCCCACTCACGACCTAAATAACAAGCTACACCTG 40465 Query 26547 TTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTG 26606 |||||||||| || | || ||||||||||| || || || |||| ||| || || | | Sbjct 40464 TTAAGAAGTGTAATACTATCAGTTGATATGGACCACCGTTATATAACCATTCATCAATAG 40405 Query 26607 TGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTG 26666 |||||||||| || || |||||||| | || |||||||| || || | | || Sbjct 40404 AAGCAGCTTCCCATATAGGATAAAAATGAACACCAATTGCGTTTGAACTAGGAATAATTG 40345 Query 26667 CTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCAT 26726 ||||| || || |||||||| || | || || || | |||||||| || || |||| Sbjct 40344 ATCCTGTAATAATGTTGTTTCCATATAATAGGGATCCAGCTACTGGCTCGCGAATTCCAT 40285 Query 26727 CTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACATGTAGTGGCTGCGAGTA 26786 | || ||||| || || |||||||| || | | || ||||||||||| |||| | | Sbjct 40284 CAATGTCTACTGGAGGAGCTGCGATAAAACCGATAATGAAACATGTAGTAGCTGTTA-AA 40226 Query 26787 AGC-AGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGTA 26845 ||| || ||||| | || ||||||||||| | || | | ||| || ||| ||| Sbjct 40225 AGCGTAGGAATCATCACAACTCCGAACCATCCAATGTATAATCTGTTTTCTAAACTAGTA 40166 Query 26846 ACCCACTCACAAAACCTCTCCCA 26868 | ||| ||| || || ||||| Sbjct 40165 ATCCAAGAACAGAATCTTTCCCA 40143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147708202416800