Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq100 461 2e-125 >seq100 Length=112360 Score = 461 bits (510), Expect = 2e-125 Identities = 707/1003 (70%), Gaps = 4/1003 (0%) Strand=Plus/Minus Query 40525 CAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATAC 40584 ||| | |||| | |||| || ||||| ||||| ||||| || ||||||||||| || | Sbjct 41142 CAGAAAAAGCAAGATCTAATGGGAAGTTATGAGCATTACGTTCATGCATTACTTCGATTC 41083 Query 40585 CTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTA 40644 | ||| | |||||| | || ||| |||||||| ||| ||| | || || || | Sbjct 41082 CAAGATTTGCTCTGTTTACAATATCTGCCCAAGTGTTAATTACTCTTCC-TTGGCTATCA 41024 Query 40645 CTACT-GACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCA-T 40702 || | || || ||||||||||| || || | |||||| ||||| ||| || || | | Sbjct 41023 ATAATCGATTGATTAAAGTTAAATCCGTTTAAGTTAAAGGCCATTGTACTAATTCCTAAT 40964 Query 40703 GGAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCT 40762 | || ||| ||| || |||| || || | ||| | | |||||||||| | ||| Sbjct 40963 GCAGTTAA-CCAAATTCCAACTACTGGCCATGCAGCTAAGAAGAAGTGTAATGAACGTGA 40905 Query 40763 ATTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGAT 40822 || || || || |||||||| |||| ||| || || || ||||| ||||| || || Sbjct 40904 GTTATTAAAACTTGCGTATTGAAAAATTAATCTTCCGAAATATCCGTGAGCAGCAACAAT 40845 Query 40823 GTTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGT 40882 ||||| || || |||| || ||||| || || || || || ||||||| |||| | Sbjct 40844 ATTATATGTTTCTTCTTCTTGTCCAAATTTGTATCCATAATTTGGTGATTCGCTTTCAGA 40785 Query 40883 GGTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACC 40942 || || ||||| ||||| ||||| || | ||||||||| |||| ||| || | ||| Sbjct 40784 AGTTTCACGAATAATTGATGAAGTTACTAAAGATCCGTGCATTGCAGAAAATAATGAACC 40725 Query 40943 ACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGC 41002 ||||| || || || || || ||| || ||||| ||||| | ||||| || || || Sbjct 40724 TCCAAAAACTCCAGCTACACCAGCCATGTGAAATGGATGCATTAATATGTTATGCTCGGC 40665 Query 41003 TTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAA 41062 |||||| || ||||||||||| || || || || |||||||||||||||||||| || Sbjct 40664 TTGGAAAACTAACATGAAGTTAAAAGTCCCTGAAATCCCTAAAGGCATACCATCAGAAAA 40605 Query 41063 AGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGT 41122 | || || || | ||||||| ||||||||||||| ||||| | | |||||| | Sbjct 40604 ACTTCCTTGTCCTATCGGATAAATTAAGAATACAGCTGTTGCTGCAGCTACTGGAGCGGA 40545 Query 41123 GTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACC 41182 | || ||||| ||||| || | ||| |||| | | | |||||||| | ||| Sbjct 40544 AAAGGCAACAAAAATCCAAGGGCGCATTCCTAAGCGAAAGCTTAATTCCCACTCACGACC 40485 Query 41183 AGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTT 41242 || ||||| ||| |||| ||||| || || || ||||||||||| || ||||| Sbjct 40484 TAAATAACAAGCTACACCTGTTAAGAAGTGTAATACTATCAGTTGATATGGACCACCGTT 40425 Query 41243 GTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGC 41302 |||| ||| || || | | | |||||||| || || || ||||| | || ||||| Sbjct 40424 ATATAACCATTCATCAATAGAAGCAGCTTCCCATATAGGATAAAAATGAACACCAATTGC 40365 Query 41303 GTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGA 41362 ||| || || |||| | | ||| | ||||| ||||| || || | || || || | Sbjct 40364 GTTTGAACTAGGAATAATTGATCCTGTAATAATGTTGTTTCCATATAATAGGGATCCAGC 40305 Query 41363 AACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA 41422 || ||||| || || ||||| || ||||| || || ||||||||||| |||| ||||| Sbjct 40304 TACTGGCTCGCGAATTCCATCAATGTCTACTGGAGGAGCTGCGATAAAACCGATAATGAA 40245 Query 41423 ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAG 41482 |||||| ||||| |||| | | |||||||| | || || ||||| || | ||||| Sbjct 40244 ACATGTAGTAGCTGTTAAAAGCGTAGGAATCATCACAACTCCGAACCATCCAATGTATAA 40185 Query 41483 GCGGTTGTCGGTGCTAGTGACCCAGTTACAAAACTTCTCCCAG 41525 | ||| || ||||| | ||| ||| || | |||||| Sbjct 40184 TCTGTTTTCTAAACTAGTAATCCAAGAACAGAATCTTTCCCAG 40142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143698705501110