Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq100 511 5e-140 >seq100 Length=112360 Score = 511 bits (566), Expect = 5e-140 Identities = 682/945 (72%), Gaps = 2/945 (0%) Strand=Plus/Minus Query 67361 AGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCC 67420 |||||| || | |||||||| ||||| ||||| || ||||| ||||| |||||||| Sbjct 41135 AGCAAGATCTAATGGGAAGTTATGAGCATTACGTTCATGCATTACTTCGATTCCAAGATT 41076 Query 67421 TGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGTCAACGACGGA 67480 ||||||||| | || ||||||||||| ||| ||| | || |||| | || Sbjct 41075 TGCTCTGTTTACAATATCTGCCCAAGTGTTAATTACTCTTCCTTGGCTATCAATAATCGA 41016 Query 67481 TTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAA 67540 ||| || ||||| || ||||| | ||| || ||||| || | || | |||||| || Sbjct 41015 TTGATTAAAGTTAAATCCGTTTAAGTTAAAGGCCATTGTACTAATTCCTAATGCAGTTAA 40956 Query 67541 CCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAA 67600 ||| || | || || || ||||||| | ||||||||| | | |||||| || || Sbjct 40955 CCAAATTCCAACTACTGGCCATGCAGCTAAGAAGAAGTGTAATGAACGTGAGTTATTAAA 40896 Query 67601 AGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGT 67660 | ||| || || || || || | ||||| ||||| |||||||||||||| || || || Sbjct 40895 ACTTGCGTATTGAAAAATTAATCTTCCGAAATATCCGTGAGCAGCAACAATATTATATGT 40836 Query 67661 CTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCT 67720 |||||||||||||| || ||||| || || || |||| || |||| |||||| | Sbjct 40835 TTCTTCTTCTTGTCCAAATTTGTATCCATAATTTGGTGATTCGCTTTCAGAAGTTTCACG 40776 Query 67721 GATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATAC 67780 |||| || ||||| || | ||| |||||||| ||| ||| | |||||| || || || Sbjct 40775 AATAATTGATGAAGTTACTAAAGATCCGTGCATTGCAGAAAATAATGAACCTCCAAAAAC 40716 Query 67781 ACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACAC 67840 || ||||| ||| ||| || ||||| ||||| | ||||| ||||| |||||||| || Sbjct 40715 TCCAGCTACACCAGCCATGTGAAATGGATGCATTAATATGTTATGCTCGGCTTGGAAAAC 40656 Query 67841 GAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTG 67900 |||||| |||||||||| || ||||| || | |||||| | ||||| ||| ||||| Sbjct 40655 TAACATGAAGTTAAAAGTCCCTGAAATCCCTAAAGGCATACCATCAGAAAAACTTCCTTG 40596 Query 67901 ACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTAC 67960 || | ||||| | ||||| ||||| |||||||| |||||||| || | || || Sbjct 40595 TCCTATCGGATAAATTAAGAATACAGCTGTTGCTGCAGCTACTGGAGCGGAAAAGGCAAC 40536 Query 67961 ACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGC 68020 | | |||||||| ||||| || | || | | |||||||| |||||| | || Sbjct 40535 AAAAATCCAAGGGCGCATTCCTAAGCGAAAGCTTAATTCCCACTCACGACCTAAATAACA 40476 Query 68021 TGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCA 68080 | | || | | |||||| || |||| ||||| | || ||||| ||||| ||||| Sbjct 40475 AGCTACACCTGTTAAGAAGTGTAATACTATCAGTTGATATGGACCACCGTTATATAACCA 40416 Query 68081 CTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACT 68140 ||||| | || || |||||||| |||||||| || |||| ||| |||||||||||||| Sbjct 40415 TTCATCAATAGAAGCAGCTTCCCATATAGGATAAAAATGAACACCAATTGCGTTTGAACT 40356 Query 68141 AGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTC 68200 ||||| || | || | ||| |||||||| || || | || || || || || || || Sbjct 40355 AGGAATAATTGATCCTGTAATAATGTTGTTTCCATATAATAGGGATCCAGCTACTGGCTC 40296 Query 68201 TCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGC 68260 | || ||||| || || |||||||| ||||| || || | || ||||| || || | Sbjct 40295 GCGAATTCCATCAATGTCTACTGGAGGAGCTGCGATAAAACCGATAATGAAACATGTAGT 40236 Query 68261 TGCTGCGAGCAAGC-AAGGAATCATCAACACACCGAACCAACCAA 68304 |||| | |||| ||||||||||| || |||||||| |||| Sbjct 40235 AGCTGTTA-AAAGCGTAGGAATCATCACAACTCCGAACCATCCAA 40192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566931856991400