Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq100 517 1e-141 >seq100 Length=112360 Score = 517 bits (572), Expect = 1e-141 Identities = 691/961 (72%), Gaps = 0/961 (0%) Strand=Plus/Minus Query 67842 AGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAAACC 67901 |||||| || | |||||||| || || ||||| |||||||| ||||| || || | | Sbjct 41135 AGCAAGATCTAATGGGAAGTTATGAGCATTACGTTCATGCATTACTTCGATTCCAAGATT 41076 Query 67902 AGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGATAGA 67961 || | ||| | || |||||||| || | || | || ||||||| || || Sbjct 41075 TGCTCTGTTTACAATATCTGCCCAAGTGTTAATTACTCTTCCTTGGCTATCAATAATCGA 41016 Query 67962 CTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAA 68021 || || ||||| || || || | ||| || ||||| || |||| || | |||||| || Sbjct 41015 TTGATTAAAGTTAAATCCGTTTAAGTTAAAGGCCATTGTACTAATTCCTAATGCAGTTAA 40956 Query 68022 CCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAA 68081 ||| || ||||| || ||||||||||| | ||||||||| | ||||| ||||| || || Sbjct 40955 CCAAATTCCAACTACTGGCCATGCAGCTAAGAAGAAGTGTAATGAACGTGAGTTATTAAA 40896 Query 68082 CGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGT 68141 ||| || || || || | | ||||| ||||| || ||||||||||| || || || Sbjct 40895 ACTTGCGTATTGAAAAATTAATCTTCCGAAATATCCGTGAGCAGCAACAATATTATATGT 40836 Query 68142 CTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCACG 68201 ||||||||||| || || ||||| ||||| || | || || |||||| |||||||| Sbjct 40835 TTCTTCTTCTTGTCCAAATTTGTATCCATAATTTGGTGATTCGCTTTCAGAAGTTTCACG 40776 Query 68202 AACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATAC 68261 || | ||| ||||| || | || || ||||||||| || | || || ||||| || Sbjct 40775 AATAATTGATGAAGTTACTAAAGATCCGTGCATTGCAGAAAATAATGAACCTCCAAAAAC 40716 Query 68262 GCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACAC 68321 ||||| || || ||| || || || ||||| | ||||| ||||| |||||||| || Sbjct 40715 TCCAGCTACACCAGCCATGTGAAATGGATGCATTAATATGTTATGCTCGGCTTGGAAAAC 40656 Query 68322 CAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTG 68381 | |||| |||| ||||| || ||||| || | |||||| | ||||| || ||||| Sbjct 40655 TAACATGAAGTTAAAAGTCCCTGAAATCCCTAAAGGCATACCATCAGAAAAACTTCCTTG 40596 Query 68382 ACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAAC 68441 || | ||||| | | ||| || || | |||||| || || || || || | ||||| Sbjct 40595 TCCTATCGGATAAATTAAGAATACAGCTGTTGCTGCAGCTACTGGAGCGGAAAAGGCAAC 40536 Query 68442 ACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGC 68501 | | |||||||| ||||| || | ||| || | |||||| ||||| || | || Sbjct 40535 AAAAATCCAAGGGCGCATTCCTAAGCGAAAGCTTAATTCCCACTCACGACCTAAATAACA 40476 Query 68502 AAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACAACCA 68561 | | ||| | | |||||| || | || ||||| | |||||||| || || ||||| Sbjct 40475 AGCTACACCTGTTAAGAAGTGTAATACTATCAGTTGATATGGACCACCGTTATATAACCA 40416 Query 68562 CTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACT 68621 ||||||| | || |||||||| || |||||||| |||| ||||||||| |||||||| Sbjct 40415 TTCATCAATAGAAGCAGCTTCCCATATAGGATAAAAATGAACACCAATTGCGTTTGAACT 40356 Query 68622 AGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTC 68681 ||||| || | || | ||| |||||||| ||||| | || || ||||| || || || Sbjct 40355 AGGAATAATTGATCCTGTAATAATGTTGTTTCCATATAATAGGGATCCAGCTACTGGCTC 40296 Query 68682 ACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAAACAGATGGT 68741 ||||| ||||| ||||| || || ||||| ||||| || ||| |||||||| | || Sbjct 40295 GCGAATTCCATCAATGTCTACTGGAGGAGCTGCGATAAAACCGATAATGAAACATGTAGT 40236 Query 68742 TGCTGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGTTCTC 68801 |||| | |||||||| ||||||| || |||||||| |||| ||| | | ||| || Sbjct 40235 AGCTGTTAAAAGCGTAGGAATCATCACAACTCCGAACCATCCAATGTATAATCTGTTTTC 40176 Query 68802 T 68802 | Sbjct 40175 T 40175 Score = 495 bits (548), Expect = 4e-135 Identities = 720/1009 (71%), Gaps = 6/1009 (1%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 || |||| || || ||||| || | || |||||||| |||| | | |||||||| || | Sbjct 29591 ATCAAAGCGCGTTTCCACGTGGTAATACCTCTTCTGGAAATATATAATTTTCATGTGGCT 29532 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 | || | |||| |||| | | |||||||| || | ||| || ||||| |||| Sbjct 29531 GGTCTTGTGCAGCCATCCATAATCTTATTCCTTCATTTAAAATAATATTTTTTGTATAGA 29472 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | || ||||| || || ||||||||||||| | ||||| || | ||||||||| || | Sbjct 29471 ATGTTTCGAATTCCGGATCTTCTGCTGCTCGTAATTCTTGCGAAATAAAGTCATAGGCGC 29412 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | | ||| | ||||| || | ||| || || | |||| ||| | ||| | ||||||| Sbjct 29411 GTAAGTTTAATGCAAGTCCTACAATTCCTATTGCGCTTGCCCATAAACCGGTTACAGGAA 29352 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| | |||||| || || ||||| || |||||| ||| || | ||||| || || | Sbjct 29351 CAAATAGCATAAAAAAGTGTAACCATCTTTTATTGGAAAAAGCTACTCCAAAAATTTGTG 29292 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 |||| || | ||| || |||||||| || || ||||||||| |||||||| | || | Sbjct 29291 ACCAAAATCTGTTGGCTGTAACCATGGAATATGTTTCTTCCGATTGAGTAGGGGTAAAGG 29232 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 || | || || |||||| || ||||||||||| |||||||| || || ||| |||||| Sbjct 29231 CTCTAAATGTATTTGCTGCATCTCCATCTTCATAAAGAGTATTTTCAACAGTAGCACCAT 29172 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| ||| | || || ||| | || | | || || || ||||||||||| || || | Sbjct 29171 GAATTGCACATAGTAACGCAGCTCCTAATACTCCAGCAACTCCCATCATATGGAATGGAT 29112 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 | || ||||| |||||||||||||||| ||| || | |||||||| ||||||| || | Sbjct 29111 TTAATGTCCAATTATGGAATCCTTGTAAGAATAGTAAAAATCGAAAAATTGCTGCAACAC 29052 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 | ||| ||| || |||||||| || | ||| || | ||| || | | ||| || || Sbjct 29051 CAAAACTTGGTGCAAAAAACCAGCTTGCTTGCCCTAAAGGATAAAGTAAAAAAACGGAAA 28992 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGAC 67245 |||||| ||||| || | || || || | ||||||||| || || || || | | | Sbjct 28991 CAAAAATGGCGATCGGTGCTGAAAATGCTAAAGCATTGTAAGGTCGAATTCCTACTAATC 28932 Query 67246 GTGCCAGTTCAAACTGGCG-AAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCC 67304 | || | |||||| || || ||||| || |||||||| || ||||| ||||| | || Sbjct 28931 GAGCAATTTCAAATTGTCGTAAGCA-AAATCCAATTAGTGCAAAAGCTCCGTGTAAGGCA 28873 Query 67305 ACAAAATTCCAGAGTCCTCCAAGTTGGATCCA-GCGGACGAAATCCCCCTGAGACTCAGG 67363 ||||| |||| || ||||||| || | ||| | || |||| || || | || || Sbjct 28872 ACAAATGTCCAAAGACCTCCAATTTTAAACCATACAGA-AAAATTTCCTTGCGCTTCTGG 28814 Query 67364 ACCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGT 67423 ||||| | ||||| | |||||| |||||| || ||| || ||||| ||||| || || Sbjct 28813 TCCCCATAAAAGAAGTAAAGAATGTCCCATACTATTAGCTGGTGTTGAAACAGCAGCCGT 28754 Query 67424 GAGAAAATTAGCACCCTCAAGATAACTAG-ACGCGAGTCCGTGAGTGTACCAGCTTGTGA 67482 | ||||||| ||| || | | || || || | || || || ||||| || | Sbjct 28753 TAAAAAATTACAACCTTCTA-AAAAGGAGCTAGCTAAGCCATGGGTATACCAAGAGGTAA 28695 Query 67483 CAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGTA 67542 |||| || | ||||||| ||| || || | || | ||| || ||||| | | || Sbjct 28694 CAAATGTGATTCCAGTAAACCATCCTCCTAGAGCTAAATACGCGCACGGAAATAATAATA 28635 Query 67543 GTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591 |||||||| || ||||| ||||| | ||| ||| ||||||||||| Sbjct 28634 AACCAGACCATCCTACAAATACAAATCTGTCTTTTTTTAGCCAGTCATC 28586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572038918777800