Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq811 145 1e-29 seq1775 86.0 9e-12 >seq811 Length=1194 Score = 145 bits (160), Expect = 1e-29 Identities = 289/428 (68%), Gaps = 7/428 (2%) Strand=Plus/Plus Query 18350 GCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAATCATCT 18409 ||||||||||||| ||| ||| | | |||| |||||||||||| || | Sbjct 6 GCCCATTCTCCTTTTTTTGCAATAGCCGGGAAAACTTCTAAAGCATTAAACAATTCTGTT 65 Query 18410 TTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATG 18469 || || |||||| | ||||| || ||||| ||||||||| |||| || ||| Sbjct 66 TTCTCAGCTTCATCTTTAACGTAAGTATCAATTAATAAAGAATACGTTTCGCTGTGAATG 125 Query 18470 CTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTA 18529 ||||||| ||||| |||| ||| || | | || || | |||||||| ||| | Sbjct 126 TTTTCCATCATAATCTGGAAACCATAGAAAAACTTCGCTTCAGCATATTGAACTTCGTTT 185 Query 18530 TAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAA 18589 ||| | || |||| || ||||| || || ||||||| || ||| || ||||| ||| Sbjct 186 ACAAAGTTCTCAGCCAAGTTTTCATTTACGATTCCGTCAGAAGCTGCAAAGAATGCTAAA 245 Query 18590 ACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTC--ATCT---ATAT 18644 | || ||||||||||| | |||||| || || || ||||| |||| |||| | || Sbjct 246 ATATGTTTAATGAAATATCTTTCATCGTCATTCAGTTTGTT--ATTCCAATCTGTCAAAT 303 Query 18645 CTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTT 18704 ||| | ||| | |||||| | ||||| ||| | ||| | ||| ||| || Sbjct 304 CTTGGTGCAAATCGATTTCTTCAGCAGTCCAGAAACTAGCTTCCATTTTTTTATACCATT 363 Query 18705 TATAAATATCTTCATGTTGTATAGGAAATAATATATATCGTTTATAATTTTTTATTAACA 18764 ||||||| | ||||| |||||||| | | | || || | ||||| | ||| | Sbjct 364 CCCAAATATCATGATGTTTGATAGGAAAAATAACGAAACGATTTTTATTTTCTTGTAAGA 423 Query 18765 TAGGTTCT 18772 | |||||| Sbjct 424 TTGGTTCT 431 >seq1775 Length=332822 Score = 86.0 bits (94), Expect = 9e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || || | || || |||| || || || ||||| | || || || Sbjct 274769 AAAATGCAGATTTTCGTCAAGACCCTGACGGGCAAGACCATTACGCTGGACGTGGAGCCC 274828 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| ||| || || ||| | ||||| || || || ||||| || || || || Sbjct 274829 TCGGATAGCATTGACAATGTCAAACAGAAAATTCAGGACAAGGAAGGGATTCCACCCGAC 274888 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || || | |||| | ||| || ||||||||||||||| | | ||||| |||| || Sbjct 274889 CAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGGACTTTGGCAGACTAC 274948 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 ||||| ||||| ||||||| || | ||||| Sbjct 274949 AATATTCAGAAAGAATCGACGCTGCACCTCGTGTT 274983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731852193714000