Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1422 95.1 2e-14 seq1110 95.1 2e-14 seq811 87.8 4e-12 >seq1422 Length=277306 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| || |||| || || || | || || | || || ||||||||||| | | | Sbjct 271504 ATATTGTAGTCAGCCAAAGTACGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGACGC 271445 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||||||||| || ||||| || || || || || | |||||||| || ||| Sbjct 271444 TGCTGATCAGGTGGAATGCCTTCCTTGTCCTGGATCTTTTGCTTTACATTGTCGATCGAA 271385 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | || || || || ||||| || |||||||| || || || | ||| || ||| Sbjct 271384 TCCGAGGGCTCCACGTCCAGCGTAATCGTCTTACCAGTCAAAGTCTTTACAAAAATTTGC 271325 Query 192535 AT 192536 || Sbjct 271324 AT 271323 >seq1110 Length=486086 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| || | ||| || ||||||||||| || | ||| || ||||| || || ||||| | Sbjct 256259 CATCTTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGCGGAATGCCTTCCT 256200 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 | || || ||||| | |||||||| || ||||||| ||| || || || |||| Sbjct 256199 TGTCCTGGATTTTCTGCTTTACATTGTCAATGCTGTCTGACGGTTCCACGTCCAGCGTAA 256140 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||| || || || || || || | ||| |||||||| Sbjct 256139 TGGTCTTGCCCGTCAACGTCTTGACAAAAATCTGCAT 256103 >seq811 Length=1194 Score = 87.8 bits (96), Expect = 4e-12 Identities = 280/438 (64%), Gaps = 17/438 (4%) Strand=Plus/Plus Query 50011 TTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAATT 50070 ||| |||||| ||| |||||||| |||| || | | ||||| ||| ||||| |||| Sbjct 1 TTAAAGCCCATTCTCCTTTTTTTGCAATAGCCGGGAAAACTTCTAAAGCATTAAACAATT 60 Query 50071 CAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCA---- 50126 | |||| ||| ||||||||||||||| |||| Sbjct 61 CTGTTTTCTCAGCTTCATCTTTAACGTAAGTATCAATTAATAAAGAATACGTTTCGCTGT 120 Query 50127 GAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTGA 50186 |||||| |||||| || || || ||| || | ||||| | ||| ||| Sbjct 121 GAATGTT----TTCCATCATAATCTGGAAACCATAGAAAAACTTCGCTTCAGCATATTGA 176 Query 50187 ACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAG 50246 |||||| | || ||| | || || ||| ||| || || ||||| ||||| ||| Sbjct 177 ACTTCGTTTACAAAGTTCTCAGCCAAGTTTTCATTTACGATTCCGTCAGAAGCTGCAAAG 236 Query 50247 AATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATT----TTCCCAAGA 50302 |||||||||| | |||||| |||| | |||||| || || | || |||| | Sbjct 237 AATGCTAAAATATGTTTAATGAAATATCTTTCATCGTCATTCAGTTTGTTATTCCAATCT 296 Query 50303 TTCAAGATCGTTTGAT--AAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTT 50360 |||| ||| ||| | ||||| | |||||| ||||| || ||| | |||| Sbjct 297 GTCAA-ATC--TTGGTGCAAATCGATTTCTTCAGCAGTCCAGAAACTAGCTTCCATTTTT 353 Query 50361 TTATACATTTGATATATATCAAAATGTTCAATGGGAAATAGTACATATCGTTTAGTAttt 50420 |||||| || | |||||| ||||| || ||||| | || | || || ||||| Sbjct 354 TTATACCATTCCCAAATATCATGATGTTTGATAGGAAAAATAACGAAACGATTTTTATTT 413 Query 50421 ttttCTAATATCGGTTCT 50438 | || ||| || |||||| Sbjct 414 TCTTGTAAGATTGGTTCT 431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984452691447750