Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq811 91.5 3e-13 seq1775 89.7 9e-13 seq1355 86.0 1e-11 >seq811 Length=1194 Score = 91.5 bits (100), Expect = 3e-13 Identities = 186/273 (68%), Gaps = 9/273 (3%) Strand=Plus/Plus Query 39474 GCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCA 39533 ||||| | ||| ||||||||| | || ||| | || || ||| ||| || || Sbjct 162 GCTTCAGCATATTGAACTTCGTTTACAAAGTTCTCAGCCAAGTTTTCATTTACGATTCCG 221 Query 39534 TCAGATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAA 39593 ||||| ||||| ||||||||||||| || |||||| |||| | |||||| || || | Sbjct 222 TCAGAAGCTGCAAAGAATGCTAAAATATGTTTAATGAAATATCTTTCATCGTCATTCAGT 281 Query 39594 TT----TTCCCAAGATTCAAGATCGTTTGAT--AAATCTACTTCTTCTATTGTCCAAAAA 39647 || |||| | |||| ||| ||| | ||||| | |||||| ||||| ||| Sbjct 282 TTGTTATTCCAATCTGTCAA-ATC--TTGGTGCAAATCGATTTCTTCAGCAGTCCAGAAA 338 Query 39648 GATGCTACGGATTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAATAACACA 39707 ||| | |||||||||| || | |||||| ||||| || ||||| | || Sbjct 339 CTAGCTTCCATTTTTTTATACCATTCCCAAATATCATGATGTTTGATAGGAAAAATAACG 398 Query 39708 TATCGTTTAGTAtttttttCTAATATCGGTTCT 39740 | || || |||||| || ||| || |||||| Sbjct 399 AAACGATTTTTATTTTCTTGTAAGATTGGTTCT 431 >seq1775 Length=332822 Score = 89.7 bits (98), Expect = 9e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 171879 TCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAA 171938 ||||| |||||| || |||| |||| || | || || | || || |||||||| Sbjct 274962 TCTTTCTGAATATTGTAGTCTGCCAAAGTCCGGCCATCTTCGAGCTGCTTGCCAGCAAAG 274903 Query 171939 ATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 171998 || | | ||| ||||| ||||| || ||||| || || || ||||| | ||| ||||| Sbjct 274902 ATCAGACGCTGCTGGTCGGGTGGAATCCCTTCCTTGTCCTGAATTTTCTGTTTGACATTG 274843 Query 171999 GTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATG 172058 || |||| || | || || || || |||||||| || || || | || || | | Sbjct 274842 TCAATGCTATCCGAGGGCTCCACGTCCAGCGTAATGGTCTTGCCCGTCAGGGTCTTGACG 274783 Query 172059 AATATCTGCATTTT 172072 || ||||||||||| Sbjct 274782 AAAATCTGCATTTT 274769 >seq1355 Length=184863 Score = 86.0 bits (94), Expect = 1e-11 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| ||||| || || ||||||||||||| | || ||||||||||| |||||||| | Sbjct 91184 CGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCT 91243 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | || || || || | || || ||| || | || || | ||||| || ||||| | Sbjct 91244 TGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGATGGCTCTACGTCGAGAGTGA 91303 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTAT 172074 | || || || || | || || | || ||||||||| ||| Sbjct 91304 TTGTCTTTCCCGTCAGCGTCTTTACAAAAATCTGCATTGTAT 91345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905111504757000