Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq1390 203 1e-47 >seq1390 Length=268060 Score = 203 bits (224), Expect = 1e-47 Identities = 250/338 (74%), Gaps = 8/338 (2%) Strand=Plus/Plus Query 40419 CCGTACGTCGCGATCTGCGCGACCTTGTCGGCC--CCGTACTTCCGGGTGACGTACTGGA 40476 ||| | ||||||||||| ||| | ||||| |||||||| | ||||||| || Sbjct 43666 CCGAAGGTCGCGATCTGGCTCACC--GCCGGCCGGCCGTACTTGTCCTTCACGTACTCGA 43723 Query 40477 TCACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCG 40534 | ||| | | || || | || |||||||||||||| || ||||| ||||| || Sbjct 43724 TGACCCGGTCGCGGTTGCCCTGGCA--GAAGTCGATGTCGAAGTCAGGCATCGACACCCG 43781 Query 40535 CTCGGGGTTCAGGAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGAT 40594 ||| ||||||||||| |||||||| | || || || ||||||||| ||||||||||| Sbjct 43782 CTCCGGGTTCAGGAAACGCTCGAACAGCAGGTTGTACTGCAGCGGGTCCAGGTCGGTGAT 43841 Query 40595 CCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGAC 40654 | || ||||| ||||||||||| || || | || || || || ||||| ||| | Sbjct 43842 CAGCAGCACGTACGCGACCAGCGAGCCCGCGCCCGATCCCCGGCCCGGGCCCACCGGGCA 43901 Query 40655 GCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCC 40714 |||||| | ||| ||||||||||||||||| | |||| ||||||||| |||||||| Sbjct 43902 GCCGTTGTTCTTGGCCCAGCGGATGAAGTCACCCACGATGAGGAAGTAGCCGGGGAAGCC 43961 Query 40715 CATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCT 40752 ||||| |||||| | ||| |||| ||| ||| ||| Sbjct 43962 CATCTTGATGATGGTCGCGAGCTCGAACTCCAGCCGCT 43999 Score = 114 bits (126), Expect = 4e-21 Identities = 215/313 (69%), Gaps = 10/313 (3%) Strand=Plus/Plus Query 39361 ACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGTCCGTACGCCG 39420 |||| || | | | ||| ||||||||| ||||| | || || | || |||||| | Sbjct 42602 ACTCCGCCGTGAAATGCACCTTCAGCCAGCCCGTGTGATAGGCCAGCAGCGAGTACGCGG 42661 Query 39421 CCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCCCACACTGCCT 39480 ||| ||||| |||||||||| ||||||| |||||| ||| || ||| | || || Sbjct 42662 CCGCGTGCGACTTGTTGAAGCCGTAGCCCGCGAACTTCTCCATCAGGTCGAAGAC---CT 42718 Query 39481 GGATGGCACCGTCCGAGTAG---CCTCGCTCGCGCGCTCCCTTCTGGAA--GTTCACGAA 39535 | ||| || | || | || |||| ||| ||||| |||| | || || Sbjct 42719 CGTCGGCCTTGTTCTGGTCGATGCCCTTCTCGGCCGCGCCCTTGCGGAACAGGTCGCGG- 42777 Query 39536 CTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTG 39595 | | |||||| | |||| |||||||||||||||||| || || |||| ||| || Sbjct 42778 -TGCATGGCCATCTCTTCGGCCTTCTTCTTGCCCATCGCGCGACGCAGCATGTCCGCGCC 42836 Query 39596 ACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGAT 39655 ||||| | |||||| ||| |||||||| || | |||||| |||||||||| || Sbjct 42837 GCCGAGCGAATACCCGCCCAGCACCTGCGCGGTCTGCATCACCTGTTCCTGGTAGACCAT 42896 Query 39656 GAGCTGGAAGGTC 39668 || | | ||||| Sbjct 42897 GATCCCGTAGGTC 42909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163880586624220