Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq1390 203 1e-47 >seq1390 Length=268060 Score = 203 bits (224), Expect = 1e-47 Identities = 250/338 (74%), Gaps = 8/338 (2%) Strand=Plus/Plus Query 40707 CCGTACGTCGCGATCTGCGCGACCTTGTCGGCC--CCGTACTTCCGGGTGACGTACTGGA 40764 ||| | ||||||||||| ||| | ||||| |||||||| | ||||||| || Sbjct 43666 CCGAAGGTCGCGATCTGGCTCACC--GCCGGCCGGCCGTACTTGTCCTTCACGTACTCGA 43723 Query 40765 TCACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCG 40822 | ||| | | || || | || |||||||||||||| || ||||| ||||| || Sbjct 43724 TGACCCGGTCGCGGTTGCCCTGGCA--GAAGTCGATGTCGAAGTCAGGCATCGACACCCG 43781 Query 40823 CTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGAT 40882 ||| ||||||||||| |||||||| | || || || ||||||||| ||||||||||| Sbjct 43782 CTCCGGGTTCAGGAAACGCTCGAACAGCAGGTTGTACTGCAGCGGGTCCAGGTCGGTGAT 43841 Query 40883 CCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGAC 40942 | || ||||| ||||||||||| || || | || || || || ||||| ||| | Sbjct 43842 CAGCAGCACGTACGCGACCAGCGAGCCCGCGCCCGATCCCCGGCCCGGGCCCACCGGGCA 43901 Query 40943 GCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCC 41002 |||||| | ||| ||||||||||||||||| | |||| ||||||||| |||||||| Sbjct 43902 GCCGTTGTTCTTGGCCCAGCGGATGAAGTCACCCACGATGAGGAAGTAGCCGGGGAAGCC 43961 Query 41003 CATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCT 41040 ||||| |||||| | ||| |||| ||| ||| ||| Sbjct 43962 CATCTTGATGATGGTCGCGAGCTCGAACTCCAGCCGCT 43999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164840561943220