Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1848 149 2e-30 seq1301 131 5e-25 seq100 125 2e-23 >seq1848 Length=203765 Score = 149 bits (164), Expect = 2e-30 Identities = 267/382 (70%), Gaps = 16/382 (4%) Strand=Plus/Plus Query 302491 TCAATTCCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTT-ATTTCTTACGGT 302549 || || ||||| || || || || | ||||| |||| | ||||| ||| | || || Sbjct 88182 TCCATCCCGTCTTCACCATACAAAAATTGAATAATTTCGC-CTTGTGCATTACGGACAGT 88240 Query 302550 CATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACC 302609 ||| || | | |||||| |||||| ||| | || |||||||| |||||||| Sbjct 88241 GCCATCGTACCGAGTCATAACTGATTCCATCGCCTTAACTAGTCGACGCTGGATATAACC 88300 Query 302610 AGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAA 302669 ||| | ||| || || ||||||||||| ||||| ||||||||||||| || ||||| Sbjct 88301 AGTCTCGGCTGTCTTCACGGCTGTATCAATCAGACCTTCACGACCACCCATCGCGTGGAA 88360 Query 302670 GAATAGCTCTTCCGGTCGTAGCCCC--CCAATAAAGGAGCTCTCAACGAAACCACGCGCC 302727 || | ||||| ||| || ||| | ||||| || | || || ||||| || Sbjct 88361 AAAAAACTCTTGTGGTGTTAAACCCTTCAAATAA--GAATTTTCCACAAAACCGCGACTT 88418 Query 302728 TCGGG---CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTAT 302784 || || |||| || ||| | |||| ||||| || | || | | | ||||| Sbjct 88419 TCAGGACCTAAATCATC---TTTGCCATAGTGCGGCAGCGTACGGTGATTAAAACCGTAA 88475 Query 302785 GGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT- 302843 || ||||| || || ||||| ||||| || |||| ||| | ||| |||||||||||||| Sbjct 88476 GGAATACGTTTACCTTCAACATTCTGTTGACCCACGCAAGCAATGATCTGCGAAATATTA 88535 Query 302844 -TAAATCACTGCCCTTGGAGCC 302864 ||||| | |||||||||||| Sbjct 88536 ATAAATGA--GCCCTTGGAGCC 88555 >seq1301 Length=515170 Score = 131 bits (144), Expect = 5e-25 Identities = 294/442 (67%), Gaps = 0/442 (0%) Strand=Plus/Plus Query 156060 TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 || ||||| ||||| || || ||||| || |||||| | |||| ||||| |||| || | Sbjct 332836 TTACCACCTTGATCAACGTAACGAGCCGTGTTATTGTAAACACGAAGCATGGGAACAAGA 332895 Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179 |||||||| ||||| || || ||| | |||||||| | |||| || ||||| Sbjct 332896 CCATTGGATTGACCATTCGTGCCAGAAATGTACGAACCAGCAGCACGAATGTTGTGAATG 332955 Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239 | | ||||||||||| | |||| ||||| ||| || ||||| ||| | || Sbjct 332956 TTCAAACCAATACCACCAGCAGATTTGGAAATCAAAGCACAAGTCTTTAAAGTTTCATAA 333015 Query 156240 ATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGT 156299 ||||| ||||| || ||||| ||| | | | |||| ||| | |||||| | Sbjct 333016 ATACCATCAATCGAGTCATCAGACATCGTCAACAAGAAGCAAGAAGACAGTTGAGGATGA 333075 Query 156300 GGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAA 156359 || || || | ||| || || |||| | ||| |||||||||| | | ||| || Sbjct 333076 TTAGTACCGGCATGGAAGAGGGTGGGTGAACCGTGAGTAAAATACTTTTCACTCATGAAA 333135 Query 156360 TCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATC 156419 | ||| | || || | |||| | || ||||| || | || | || | ||| Sbjct 333136 TTGTACGATTCAATAGCCGAGTCAATGTCAGTACCGTGCATTCCTATGCAAACACGCATG 333195 Query 156420 CACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCC 156479 ||| || |||||||| || || | | ||| |||| || | |||||| ||||| Sbjct 333196 AGCATGTGTTGAGGACGTTCAACGACGCGTTCATTAATTTTCATCAAGTATGCACGTTCA 333255 Query 156480 AGAGTTTTAAACCCGAAATAAT 156501 ||||| || || || || |||| Sbjct 333256 AGAGTCTTGAAACCAAAGTAAT 333277 >seq100 Length=112360 Score = 125 bits (138), Expect = 2e-23 Identities = 328/495 (66%), Gaps = 28/495 (6%) Strand=Plus/Plus Query 288876 TGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTG 288935 |||||| ||||||| || || || ||||| || | | ||||| ||| | | | | Sbjct 51975 TGCTGGATCTAATACATTGGTTCGATTTGTAGCACCAATTACAATAATTCCTGTTGATGG 52034 Query 288936 CTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGA 288995 || ||| |||||||| ||| | || || | |||||| || | |||||||||| Sbjct 52035 CTCAAAGCCATCCATTTCAACTAATAACTGGTTTAATGTTTGATCTCGTTCATCATTT-- 52092 Query 288996 ACCTC---TTGAAT------CACCCGAATCGCTCCtttttttACCAACAGCATCAATTTC 289046 ||| || ||| |||| || ||| | |||| |||| | ||||||||| Sbjct 52093 -CCTGGATTTAAATTTCGACCACCTGA-TCGTGC-----TTTAGCAACTGAATCAATTTC 52145 Query 289047 GTCAATGAAAATCACACACGGAGAATTTTG----TCTCGCAATTGC-AAATAATTCTCTT 289101 ||||| |||| | ||| || || | ||| || |||| ||||||||| ||| Sbjct 52146 ATCAATAAAAACAATACAAGG----TTGTAAAGATCTTGCT-TTGCTAAATAATTCCCTT 52200 Query 289102 ACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATG 289161 ||||||| || || || |||| | | || |||||||||||| | || ||| | Sbjct 52201 ACACGGGCCGCCCCTAGTCCAATTAAAAGCTCAACAAATTCAGAACCTGAAGCTTTTAAA 52260 Query 289162 AATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGT 289221 |||| || ||||| || || | || | || | | ||| || || |||||||| Sbjct 52261 AATGGAACCCCAGCTTCCCCAGCAATAGCTTTGGCAAATAATGTTTTTCCAGTTCCAGGA 52320 Query 289222 GGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGG 289281 ||||| |||||| ||| || ||||| | || || || |||||| | ||||| Sbjct 52321 GGTCCACCTAATAAAACACCTTTTGGAATTTCGGCTCCTAACCTTTTATATATTTCAGGA 52380 Query 289282 CTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACA 289341 | |||||||| |||| ||||| ||| | ||| | |||||| |||| ||| || | | Sbjct 52381 TTTTTTAAAAAATCTATAATTTGCTCTATTTCTTTTTTTGCACTATCATTTCCAGCAATA 52440 Query 289342 TCAGCAAAAGTAATA 289356 || | |||| |||| Sbjct 52441 TCTGTAAAACGAATA 52455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471776773159605