Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq1390 203 1e-47 >seq1390 Length=268060 Score = 203 bits (224), Expect = 1e-47 Identities = 250/338 (74%), Gaps = 8/338 (2%) Strand=Plus/Plus Query 40167 CCGTACGTCGCGATCTGCGCGACCTTGTCGGCC--CCGTACTTCCGGGTGACGTACTGGA 40224 ||| | ||||||||||| ||| | ||||| |||||||| | ||||||| || Sbjct 43666 CCGAAGGTCGCGATCTGGCTCACC--GCCGGCCGGCCGTACTTGTCCTTCACGTACTCGA 43723 Query 40225 TGACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCG 40282 ||||| | | || || | || |||||||||||||| || ||||| ||||| || Sbjct 43724 TGACCCGGTCGCGGTTGCCCTGGCA--GAAGTCGATGTCGAAGTCAGGCATCGACACCCG 43781 Query 40283 CTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGAT 40342 ||| ||||||||||| |||||||| | || || || ||||||||| ||||||||||| Sbjct 43782 CTCCGGGTTCAGGAAACGCTCGAACAGCAGGTTGTACTGCAGCGGGTCCAGGTCGGTGAT 43841 Query 40343 CCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGAC 40402 | || ||||| ||||||||||| || || | || ||||| || ||||| ||| | Sbjct 43842 CAGCAGCACGTACGCGACCAGCGAGCCCGCGCCCGATCCCCGGCCCGGGCCCACCGGGCA 43901 Query 40403 CCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCC 40462 ||||| | ||| ||||||||||||||||| | |||| ||||||||| ||||| || Sbjct 43902 GCCGTTGTTCTTGGCCCAGCGGATGAAGTCACCCACGATGAGGAAGTAGCCGGGGAAGCC 43961 Query 40463 CATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCT 40500 ||||| |||||| | ||| |||| ||| ||| ||| Sbjct 43962 CATCTTGATGATGGTCGCGAGCTCGAACTCCAGCCGCT 43999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163320601021470