Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq100 536 1e-147 >seq100 Length=112360 Score = 536 bits (594), Expect = 1e-147 Identities = 684/942 (73%), Gaps = 0/942 (0%) Strand=Plus/Plus Query 157622 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCGTC 157681 || |||||||| || |||||||||| || || || |||| || | |||||||| || Sbjct 40194 GGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACTACATGTTTCATTATC 40253 Query 157682 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 157741 | || |||| ||||| || || ||||| || || || || || || || ||||| || Sbjct 40254 GGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCTGGATCC 40313 Query 157742 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGT 157801 || | ||||| |||||||| || | || || || | || ||| |||||||||||| Sbjct 40314 CTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCAATTGGT 40373 Query 157802 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 157861 |||| || ||||| || |||||||| || || ||||||| ||| | |||||||||||| Sbjct 40374 GTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAACGGTGGT 40433 Query 157862 CCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAG 157921 || | ||||| ||||||| |||||| | | ||| | | || | || |||||| Sbjct 40434 CCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGTCGTGAG 40493 Query 157922 TGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCA 157981 |||||| | | || ||||| |||||||| ||||| | ||| || | ||| |||||| Sbjct 40494 TGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCCGCTCCA 40553 Query 157982 GTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGAT 158041 || ||||||||| | ||||||||| | | ||||| | || ||||| ||| || ||| Sbjct 40554 GTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTTTCTGAT 40613 Query 158042 GCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACAC 158101 | ||||||| | || || || || |||||||||| |||| | || |||||||| || || Sbjct 40614 GGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCCGAGCAT 40673 Query 158102 AACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTT 158161 ||||| | ||||| || || || ||| ||||| ||||| || || || || || | Sbjct 40674 AACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGTTCATTA 40733 Query 158162 TTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACA 158221 || ||||| ||||||||| | | || ||||| ||| | |||||||||| |||||| Sbjct 40734 TTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCTGAAAGC 40793 Query 158222 GAGTCACAGAACTACGGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCA 158281 || |||| || || || ||||| || || ||||| ||||| || ||||| || || || Sbjct 40794 GAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATATTGTTGCT 40853 Query 158282 GCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCC 158341 || || || || ||||| | || || || |||||||| || || ||||| ||||| Sbjct 40854 GCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCACGTTCA 40913 Query 158342 TTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTC 158401 || ||||||||| | ||||||||||| || || || || ||||| || || | || | Sbjct 40914 TTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATTAGGAATT 40973 Query 158402 TCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG 158461 || ||||| || ||| | ||||| || ||||| || || || || ||||| | || Sbjct 40974 AGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCAA 41033 Query 158462 GGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTT 158521 || | || | ||||| ||||||||| | | ||| | || |||||| || ||||| Sbjct 41034 GGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAATCGAAGTA 41093 Query 158522 ATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCT 158563 |||||||| ||||| || || ||||||||| | || |||||| Sbjct 41094 ATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGCT 41135 Score = 434 bits (480), Expect = 1e-116 Identities = 706/1011 (70%), Gaps = 4/1011 (0%) Strand=Plus/Plus Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365 ||||||||||| ||| ||| | ||||| ||||| || |||||||| || || | || Sbjct 28586 GATGACTGGCTAAAAAAAGACAGATTTGTATTTGTAGGATGGTCTGGTTTATTATTATTT 28645 Query 159366 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 159425 || || ||| | || | || || ||| ||||||| | | |||||||| |||| Sbjct 28646 CCGTGCGCGTATTTAGCTCTAGGAGGATGGTTTACTGGAATCACATTTGTTACCTCTTGG 28705 Query 159426 TACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGTC 159485 || ||||| || | ||||| |||| | | || ||| ||| ||| | || || ||||| Sbjct 28706 TATACCCATGGCTTAGCTAGCTCCTTTTTAGAAGGTTGTAATTTTTTAACGGCTGCTGTT 28765 Query 159486 TCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 159545 || || || ||| | |||||| |||||| | ||||| | ||||| || || | || Sbjct 28766 TCAACACCAGCTAATAGTATGGGACATTCTTTACTTCTTTTATGGGGACCAGAAGCGCAA 28825 Query 159546 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGT 159605 || ||||| |||| || |||| || | |||| ||||| || | ||||| Sbjct 28826 GGAAATTTTTCTGTATGGTTTAAAATTGGAGGTCTTTGGACATTTGTTGCCTTACACGGA 28885 Query 159606 GCCTTCGCCCTAATTGGTTTCATGC-TCCGTCAGTTTGAACTGGCACGTCTCATTGGTAT 159664 || || || |||||||| || ||| | || || |||||| | || || | | || || Sbjct 28886 GCTTTTGCACTAATTGGATT-TTGCTTACGACAATTTGAAATTGCTCGATTAGTAGGAAT 28944 Query 159665 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCT 159724 || |||||||||||| | || || || | || || || ||||||| ||| || | Sbjct 28945 TCGACCTTACAATGCTTTAGCATTTTCAGCACCGATCGCCATTTTTGTTTCCGTTTTTTT 29004 Query 159725 CATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAAT 159784 | || || || || || | || |||||||| || || ||||| || |||||||| Sbjct 29005 ACTTTATCCTTTAGGGCAAGCAAGCTGGTTTTTTGCACCAAGTTTTGGTGTTGCAGCAAT 29064 Query 159785 CTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATAT 159844 ||| |||| | | ||| | |||||||| || || ||||| |||||||| |||||||| Sbjct 29065 TTTTCGATTTTTACTATTCTTACAAGGATTCCATAATTGGACATTAAATCCATTCCATAT 29124 Query 159845 GATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGT 159904 ||||||||||||||| || |||| | || |||| |||| || ||||| | |||||| Sbjct 29125 GATGGGAGTTGCTGGAGTATTAGGAGCTGCGTTACTATGTGCAATTCATGGTGCTACTGT 29184 Query 159905 AGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAAC 159964 || || || || |||||||||||||| ||||||||| |||| || ||| | || Sbjct 29185 TGAAAATACTCTTTATGAAGATGGAGATGCAGCAAATACATTTAGAGCCTTTACCCCTAC 29244 Query 159965 TCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 160024 |||| ||| || || || || ||||| || || ||| | || ||||| || || || || Sbjct 29245 TCAATCGGAAGAAACATATTCCATGGTTACAGCCAACAGATTTTGGTCACAAATTTTTGG 29304 Query 160025 TATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGG 160084 | || ||||| || || | ||| | || || || ||| | ||||| ||||| | || Sbjct 29305 AGTAGCTTTTTCCAATAAAAGATGGTTACACTTTTTTATGCTATTTGTTCCTGTAACCGG 29364 Query 160085 TCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTT-CGTGCTTACGATT 160143 | | ||| || | | || || ||| | || ||||| |||| ||| || || || || | Sbjct 29365 TTTATGGGCAAGCGCAATAGGAATTGTAGGACTTGC-ATTAAACTTACGCGCCTATGACT 29423 Query 160144 TCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAA 160203 | | ||||| | |||||||||||||||| ||||| || || ||||| || |||| Sbjct 29424 TTATTTCGCAAGAATTACGAGCAGCAGAAGATCCGGAATTCGAAACATTCTATACAAAAA 29483 Query 160204 ACATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAA 160263 | || | || || |||||| || | |||| |||| | || || || ||||||| Sbjct 29484 ATATTATTTTAAATGAAGGAATAAGATTATGGATGGCTGCACAAGACCAGCCACATGAAA 29543 Query 160264 ACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAATAAA 160314 | | ||| || |||||||| ||||| || | || ||||| |||| || || Sbjct 29544 ATTATATATTTCCAGAAGAGGTATTACCACGTGGAAACGCGCTTTGATGAA 29594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548359559617800