Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_021531.1 Length=223989 Score E Sequences producing significant alignments: (Bits) Value seq1501 123 4e-23 >seq1501 Length=377221 Score = 123 bits (136), Expect = 4e-23 Identities = 228/332 (69%), Gaps = 2/332 (1%) Strand=Plus/Plus Query 99585 AAGTTGTCTTGTCAGCTCTATCAGCGTAGTGCCGACGTGTTCTTGGGTGTGCCGTTTAAC 99644 |||||||| || ||||| || ||||| || || ||| | ||| |||| |||||||| ||| Sbjct 113739 AAGTTGTCGTGCCAGCTGTACCAGCGCAGCGCGGACATCTTCCTGGGCGTGCCGTTCAAC 113798 Query 99645 ATCGCGTCGTATGCTCTACTGATTCACATGTTTGCACAGCAG-GCGAATATGGCGGTGGG 99703 |||||| || || || |||| || ||| | || ||||| ||| | ||| | | || Sbjct 113799 ATCGCGAGCTACGCGCTGCTGACGCAGATGCTGGCGCAGCAATGCGGAC-TGGGGCTCGG 113857 Query 99704 CGATTTCGTCTGGACCGGCGGTGATGTGCATCTGTATTCTAACCATCTGGAACAGGCACG 99763 || ||| ||||||| ||||| || || | || | || || | || |||| | Sbjct 113858 GGACTTCATCTGGACGGGCGGGGACTGCCACATCTACGCAAATCACTTCGAGCAGGTGCA 113917 Query 99764 TACTCAGTTAGGTCGTACTCCGCGTGCGTTGCCTAAGCTGATTATCAAACGTAAGCCGGA 99823 || ||| | | || ||| ||||| || | | || | ||||| || |||||| Sbjct 113918 GACGCAGCTGGCGCGCGAGCCGTATGCGTACCCGACGATGGTGATCAAGCGCCAGCCGGC 113977 Query 99824 CTCTATCTTCGACTATAAGTTCGAAGATTTTGATATCGAAGGCTACGACCCACACCCGGC 99883 || ||||||||||| ||||||| || || || | | | |||| | | ||| |||| Sbjct 113978 GTCGATCTTCGACTACGAGTTCGAGGACTTCGAGCTGCAGGACTACCAGCACCACGCGGC 114037 Query 99884 TATTAAAGCACCGGTGGCGATATGAGTAATAA 99915 || || || ||||||||| | |||| |||| Sbjct 114038 GATCAAGGCGCCGGTGGCGGTGTGAGCGATAA 114069 Score = 111 bits (122), Expect = 2e-19 Identities = 169/239 (71%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTT--GC 99009 ||||| || || || || || | | | | ||||| ||||| ||||| ||||| | || Sbjct 70289 GACCGAACTGGCACGGGTACTCGTGCCGTTTTCGGTCACCAAATGCGCTTCAATCTCAGC 70348 Query 99010 AAGAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAAC 99069 ||| || ||||| || | || || ||| ||||||||||| || || ||| | Sbjct 70349 AAG--GGCTTCCCCGTGCTGACCACAAAGAAGCTTCACCTGCGCTCCATCATTGTTGAGC 70406 Query 99070 TGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCA 99129 | || |||||||| || ||||| |||||| | | || ||||| || || ||| Sbjct 70407 TACTTTGGTTCCTTCGTGGAGACACGAATATCAAATGGCTCAAAGAAAACAACGTCTCCA 70466 Query 99130 TTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGG 99188 | |||||||||||||| || | ||||| ||||| || || || ||||| ||||||||| Sbjct 70467 TCTGGGACGAATGGGCCGATGAGAATGGGGACCTGGGCCCCGTCTACGGAAAGCAGTGG 70525 Score = 91.5 bits (100), Expect = 2e-13 Identities = 167/242 (69%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 98951 AGACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCA 99010 |||||| || || || ||||||| ||||||| || |||||||| ||| | || | Sbjct 69650 AGACCGCACGGGAACGGGCACGCGGAGCGTCTTCGGTCATCAGATGCGATTCGATCTGAA 69709 Query 99011 AGAAGGTTTCCCGCTGGTAACGACCAAGC-GTTGCCACCTGCGCTCTATTATCCATGAAC 99069 || || |||||||| || ||||| ||| | ||| | ||| || || |||| || | Sbjct 69710 CGAGGGATTCCCGCTCGTGACGACGAAGAAGGTGC-ATCTGAAGTCGATCATCCTGGAGC 69768 Query 99070 TGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCA 99129 |||||||||||||| || ||| | || || ||| || | || || || | Sbjct 69769 TGCTGTGGTTCCTGCGCGGGGACTCGAACGTCAAGTGGTTGCAGGAACGCGGCTGCACGA 69828 Query 99130 TTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGC 99189 | |||||||| |||||| | | | || ||||| || ||||| ||||| ||| |||| Sbjct 69829 TCTGGGACGAGTGGGCGCGCGAGGACGGTGACCTGGGGCCGGTGTACGGCGTGCAATGGC 69888 Query 99190 GG 99191 || Sbjct 69889 GG 69890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716617406016600