Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq100 500 1e-136 >seq100 Length=112360 Score = 500 bits (554), Expect = 1e-136 Identities = 676/942 (72%), Gaps = 0/942 (0%) Strand=Plus/Plus Query 150881 GGTTGGTTCGGTGTGCTGATGATTCCAACTCTGTTGGCAGCAACCATTTGCTTCATCGTG 150940 || |||||||| || |||||||||| || || || |||| || | || ||||| | Sbjct 40194 GGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACTACATGTTTCATTATC 40253 Query 150941 GCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCT 151000 | || ||||| ||||| || || ||||| ||||| || || || || || ||||| || Sbjct 40254 GGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCTGGATCC 40313 Query 151001 CTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGT 151060 || | || || |||||||| || | || | || ||||| ||| ||||| || ||| Sbjct 40314 CTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCAATTGGT 40373 Query 151061 CTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGT 151120 | || || ||||| || |||||||| || ||| | ||||||||| | || ||||||||| Sbjct 40374 GTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAACGGTGGT 40433 Query 151121 CCTTTCCAACTCGTTGTCTTCCACTTCCTGATTGGTATCTATGCTTACATGGGTCGTGAG 151180 || | ||||| | || || |||||| | | ||| | | ||| | ||||||||| Sbjct 40434 CCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGTCGTGAG 40493 Query 151181 TGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGCGTTGCATACTCTGCTCCA 151240 |||||| | | ||||| || ||||| || ||||| | ||||| | || |||||| Sbjct 40494 TGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCCGCTCCA 40553 Query 151241 GTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAT 151300 || ||||| || | || || ||| | | ||||| | || ||||| ||| |||||| Sbjct 40554 GTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTTTCTGAT 40613 Query 151301 GCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCAC 151360 | ||||| | || ||||| || || || |||| |||| | || |||||||| ||||| Sbjct 40614 GGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCCGAGCAT 40673 Query 151361 AACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTC 151420 ||||| | ||||| || || || ||| |||||| ||||| || || || || || | Sbjct 40674 AACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGTTCATTA 40733 Query 151421 TTCTCGGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAAC 151480 || || ||||||||||| ||| | || ||||| || | ||||||| || | |||| | Sbjct 40734 TTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCTGAAAGC 40793 Query 151481 GAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCC 151540 || || | || ||||| ||||| || || ||||||||||| || || || || ||||| Sbjct 40794 GAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATATTGTTGCT 40853 Query 151541 GCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCG 151600 || ||||| || || || | | || || |||||||| || || || || ||||| Sbjct 40854 GCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCACGTTCA 40913 Query 151601 CTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTC 151660 | ||||||||| | || |||||||| || || || || ||||| |||||| | || | Sbjct 40914 TTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATTAGGAATT 40973 Query 151661 AGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAG 151720 || || ||||| || ||| | ||||| || ||||| || || || || || ||| | || Sbjct 40974 AGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCAA 41033 Query 151721 GGCAAAGTCCTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTT 151780 || | ||| | ||||| |||||||| || | ||| | ||| ||| || || ||||| Sbjct 41034 GGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAATCGAAGTA 41093 Query 151781 ATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCT 151822 ||||| || ||||||||||| |||||||| | || |||||| Sbjct 41094 ATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGCT 41135 Score = 473 bits (524), Expect = 1e-128 Identities = 715/1009 (71%), Gaps = 6/1009 (1%) Strand=Plus/Plus Query 152371 GATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTT-TT 152429 ||||||||||| || | |||| | || || ||||| || |||||||| || || || || Sbjct 28586 GATGACTGGCTAAAAAAAGACAGATTTGTATTTGTAGGATGGTCTGG-TTTATTATTATT 28644 Query 152430 TCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTG 152489 ||| || ||| | ||| | || || ||| ||||||| | || || | || ||| Sbjct 28645 TCCGTGCGCGTATTTAGCTCTAGGAGGATGGTTTACTGGAATCACATTTGTTACCTCTTG 28704 Query 152490 GTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGT 152549 |||||| || || || || || |||| | | || || || ||| | || || || || Sbjct 28705 GTATACCCATGGCTTAGCTAGCTCCTTTTTAGAAGGTTGTAATTTTTTAACGGCTGCTGT 28764 Query 152550 TTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCA 152609 ||| || ||||| || |||||| |||||| | || ||| | ||||| || || || || Sbjct 28765 TTCAACACCAGCTAATAGTATGGGACATTCTTTACTTCTTTTATGGGGACCAGAAGCGCA 28824 Query 152610 AGGGGATTTCGTCAG-ATGGATTCAGCTCGGAGGACTCTGGGCTTTTGTGGCGCTCCACG 152668 ||| |||| || | |||| || | | ||||| || ||| | ||||| || | |||| Sbjct 28825 AGGAAATTT-TTCTGTATGGTTTAAAATTGGAGGTCTTTGGACATTTGTTGCCTTACACG 28883 Query 152669 GGGCTTTCGCTCTAATCGGTTTCATGCTT-CGCCAGTTTGAACTGGCACGTCTCATCGGT 152727 | ||||| || ||||| || || ||||| || || |||||| | || || | | || Sbjct 28884 GAGCTTTTGCACTAATTGGATT-TTGCTTACGACAATTTGAAATTGCTCGATTAGTAGGA 28942 Query 152728 ATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTT 152787 || || || ||||||||| | || || || | || ||||| |||||||| ||| ||| Sbjct 28943 ATTCGACCTTACAATGCTTTAGCATTTTCAGCACCGATCGCCATTTTTGTTTCCGTTTTT 29002 Query 152788 CTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCA 152847 | | || ||| | || ||| | || |||||||| || ||| ||| || || |||||| Sbjct 29003 TTACTTTATCCTTTAGGGCAAGCAAGCTGGTTTTTTGCACCAAGTTTTGGTGTTGCAGCA 29062 Query 152848 ATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAATCCGTTTCAT 152907 || || ||||| | || ||| | ||||||||||| || |||||||| ||||| || ||| Sbjct 29063 ATTTTTCGATTTTTACTATTCTTACAAGGATTCCATAATTGGACATTAAATCCATTCCAT 29122 Query 152908 ATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCATGGTGTTACA 152967 |||||||| ||||| || | || |||| || || || | ||| |||||||||| ||| Sbjct 29123 ATGATGGGAGTTGCTGGAGTATTAGGAGCTGCGTTACTATGTGCAATTCATGGTGCTACT 29182 Query 152968 GTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTTCAAAGCTTTCGACAGC 153027 || || |||||| | ||| ||||||| || |||||| || || | ||| || | Sbjct 29183 GTTGAAAATACTCTTTATGAAGATGGAGATGCAGCAAATACATTTAGAGCCTTTACCCCT 29242 Query 153028 ACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTT 153087 |||||| ||||| || ||||| |||||||| || ||| | || ||||| || || ||| Sbjct 29243 ACTCAATCGGAAGAAACATATTCCATGGTTACAGCCAACAGATTTTGGTCACAAATTTTT 29302 Query 153088 GGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATG 153147 ||| | |||||| ||||||| | ||| | || || |||||||| ||||| ||||| | Sbjct 29303 GGAGTAGCTTTTTCCAATAAAAGATGGTTACACTTTTTTATGCTATTTGTTCCTGTAACC 29362 Query 153148 GGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGAT 153207 ||| | ||| | | || ||||| | || ||||| | || | || || || || Sbjct 29363 GGTTTATGGGCAAGCGCAATAGGAATTGTAGGACTTGCATTAAACTTACGCGCCTATGAC 29422 Query 153208 TTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAG 153267 ||| | || |||||| | | || |||||||||| ||||| || || |||||||| || Sbjct 29423 TTTATTTCGCAAGAATTACGAGCAGCAGAAGATCCGGAATTCGAAACATTCTATACAAAA 29482 Query 153268 AATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTGACCAACCTCATGAG 153327 ||||| |||| || ||||| | | ||| |||| | ||||| || ||||| Sbjct 29483 AATATTATTTTAAATGAAGGAATAAGATTATGGATGGCTGCACAAGACCAGCCACATGAA 29542 Query 153328 AACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTCTGTGAT 153376 || | | || || ||||||||||| ||||| || ||||| || |||| Sbjct 29543 AATTATATATTTCCAGAAGAGGTATTACCACGTGGAAACGCGCTTTGAT 29591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549607525843800