Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq100 526 2e-144 >seq100 Length=112360 Score = 526 bits (582), Expect = 2e-144 Identities = 694/958 (72%), Gaps = 6/958 (1%) Strand=Plus/Plus Query 72271 TACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTC 72330 ||| |||| ||||| || || | ||||| || ||| |||| ||| || | |||||| Sbjct 40188 TACATTGGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACTACATGTTTC 40247 Query 72331 ATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCG 72390 ||| | | || ||||| ||||||||||| || || || ||||| | || ||||| || Sbjct 40248 ATTATCGGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCT 40307 Query 72391 GGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCA 72450 || || | |||||||| |||||||| || | || | | |||| |||||||||| Sbjct 40308 GGATCCCTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCA 40367 Query 72451 ATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAAC 72510 || || | || || ||||| || |||||||| || |||| || || ||||| |||||| Sbjct 40368 ATTGGTGTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAAC 40427 Query 72511 GGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGT 72570 || ||||| || || | | | || |||||| | | || | || || | ||| Sbjct 40428 GGTGGTCCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGT 40487 Query 72571 AGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCA 72630 | |||||||| || | | |||||||| | |||||||| | ||| || | || Sbjct 40488 CGTGAGTGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCC 40547 Query 72631 GCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTC 72690 || || ||| |||||||| || |||||| | | ||||| | || || || || Sbjct 40548 GCTCCAGTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTT 40607 Query 72691 TCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCA 72750 |||||||||||||| |||| || ||||| || || ||||||||||| || |||||||| Sbjct 40608 TCTGATGGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCC 40667 Query 72751 GAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGT 72810 || || |||||| ||||||| || || || ||||| |||||||| || | || || ||| Sbjct 40668 GAGCATAACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGT 40727 Query 72811 --AGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAGACAA 72868 | | | ||| |||||||||||| || | || |||||||| | || | || || Sbjct 40728 TCATTATTTTC--TGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTT 40785 Query 72869 CAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACA 72928 | || | ||| | ||| || || || || || ||||||||||||||||||||||| | Sbjct 40786 CTGAAAGCGAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATA 40845 Query 72929 TTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACT 72988 ||||||||||||| ||||| ||||| |||||||| || || || ||| || || |||| Sbjct 40846 TTGTTGCTGCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACT 40905 Query 72989 CTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAA 73048 | |||||||||||||||||| | |||| || || ||||| | | |||||||| || Sbjct 40906 CACGTTCATTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCAT 40965 Query 73049 TGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAG 73108 | || || |||||||||| || ||| | |||||||| ||||| || ||||| || | | Sbjct 40966 TAGGAATTAGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTG 41025 Query 73109 AT-GCAAACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGA 73167 || || || | | || || | || |||| |||| || | ||||||||||| |||||| Sbjct 41026 ATAGCCAAGGAAGAGTAATTAAC-ACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGA 41084 Query 73168 ATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTG 73225 || ||||| ||||||||| | ||||| || ||||||||| |||| || || | | ||| Sbjct 41085 ATCGAAGTAATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGCTTTTTCTG 41142 Score = 443 bits (490), Expect = 2e-119 Identities = 719/1027 (70%), Gaps = 31/1027 (3%) Strand=Plus/Plus Query 73376 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 73435 ||||| ||| |||| | ||| | || ||||| | |||||||||||| | ||| | || Sbjct 28586 GATGACTGGCTAAAAAAAGACAGATTTGTATTTGTAGGATGGTCTGGTTTATTATTATTT 28645 Query 73436 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGG 73495 || || || || |||| | ||||| ||||| |||| || || || ||||| ||| Sbjct 28646 CCGTGCGCGTATTTAGCTCTAGGAGGATGGTTTACTGGAATCACATTTGTTACCTCTTGG 28705 Query 73496 TACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTAACTGCAGCAGTA 73555 || || ||||| | || ||| | | | || || ||||||||||| || || || Sbjct 28706 TATACCCATGGCTTAGCTAGCTCCTTTTTAGAAGGTTGTAATTTTTTAACGGCTGCTGTT 28765 Query 73556 TCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTT--TGGGGACCAGAGGCAC 73613 |||||||| | | || |||||| ||| ||| | ||| || ||||||||||| || | Sbjct 28766 TCAACACCAGCTAATAGTATGGGACAT--TCTTTACTTCTTTTATGGGGACCAGAAGCGC 28823 Query 73614 AAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTACATG 73673 ||||| || || ||||||| || | || || || |||| ||||| || ||||| | Sbjct 28824 AAGGAAATTTTTCTGTATGGTTTAAAATTGGAGGTCTTTGGACATTTGTTGCCTTACACG 28883 Query 73674 GAGTCTTTGGACTCATAGGTTTCATGCTTA-GACAGTTTGAGATTGCAGGACTTGTTGGG 73732 ||| |||| ||| || || || |||||| |||| ||||| ||||| || | || || Sbjct 28884 GAGCTTTTGCACTAATTGGATT-TTGCTTACGACAATTTGAAATTGCTCGATTAGTAGGA 28942 Query 73733 ATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCACGAGCATCTTT 73792 || || |||||||| || ||||| ||||||||| ||||| | || | | ||| Sbjct 28943 ATTCGACCTTACAATGCTTTAGCATTTTCAGCACCGATCGCCATTTTTGTTTCCGTTTTT 29002 Query 73793 CTAATATATCCTTTAGGAC-AGCATAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCAGC 73851 || | ||||||||||| | |||| || ||||| || ||||| || ||||| ||||| Sbjct 29003 TTACTTTATCCTTTAGGGCAAGCA-AGCTGGTTTTTTGCACCAAGTTTTGGTGTTGCAGC 29061 Query 73852 AATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCA 73911 ||| ||||| | | | ||||| |||| || ||||| ||| || | |||||||| || Sbjct 29062 AATTTTTCGATTTTTACTATTCTTACAAGGATTCCATAATTGGACATTAAATCCATTCCA 29121 Query 73912 TATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAAC 73971 ||||||||| || || || || | || | || ||||||||||| || |||||||| || Sbjct 29122 TATGATGGGAGTTGCTGGAGTATTAGGAGCTGCGTTACTATGTGCAATTCATGGTGCTAC 29181 Query 73972 AGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCTAC 74031 || | || || | |||||||| || |||| | | | | Sbjct 29182 TGTTGAAAATACTCTTTATGAAGA---------------TG-----GAGATGC-AGCAAA 29220 Query 74032 AACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTATGATTACTGCTAA 74091 || || ||||| || ||||| || ||||| || ||| ||| |||| || || Sbjct 29221 TACATTTAGAGCCTTTACCCCTACTCAATCGGAAGAAACATATTCCATGGTTACAGCCAA 29280 Query 74092 CAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTCCT 74151 |||||| |||||||| || ||||| |||| ||||| || ||||||| |||||||| | Sbjct 29281 CAGATTTTGGTCACAAATTTTTGGAGTAGCTTTTTCCAATAAAAGATGGTTACACTTTTT 29340 Query 74152 TATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTAGC 74211 |||| | || || ||||| | ||| | ||| || | ||||| || ||||| || || Sbjct 29341 TATGCTATTTGTTCCTGTAACCGGTTTATGGGCAAGCGCAATAGGAATTGTAGGACTTGC 29400 Query 74212 ACTTAACCTTA-GAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAG 74270 | |||| |||| | || || |||||| | || ||||| || ||||||||||||| || | Sbjct 29401 A-TTAAACTTACGCGCCTATGACTTTATTTCGCAAGAATTACGAGCAGCAGAAGATCCGG 29459 Query 74271 AGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGT 74330 | || ||||| ||||| || || || ||| || | |||||||| || ||| ||||||| Sbjct 29460 AATTCGAAACATTCTATACAAAAAATATTATTTTAAATGAAGGAATAAGATTATGGATGG 29519 Query 74331 CATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCA 74390 | | || || || ||||| || | | | || |||||||| || || ||||| || | Sbjct 29520 CTGCACAAGACCAGCCACATGAAAATTATATATTTCCAGAAGAGGTATTACCACGTGGAA 29579 Query 74391 ACGCACT 74397 |||| || Sbjct 29580 ACGCGCT 29586 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/168 (74%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 73062 AATGGCATTCAACCTTAA-CGGATTCAACTTCAACCAATCAGTTGTAGAT-GCAAACGGA 73119 |||||| || | ||||| |||||| ||||| || ||||| || | ||| || || | | Sbjct 112357 AATGGCCTTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCAAGGAA 112298 Query 73120 AAGATTGTACCAACATGGGG-AGATGT-TCTTAACAGAGCAAACCTTGGAATGGAAGTTA 73177 || || || | |||| |||| | | | ||||||||||| |||||||| ||||| | Sbjct 112297 GAGTAATTAACA-CTTGGGCCAGATATATGTAAACAGAGCAAATCTTGGAATCGAAGTAA 112239 Query 73178 TGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTG 73225 |||||||| | ||||| || ||||| ||| |||| || || | | ||| Sbjct 112238 TGCATGAACGTAATGCTCATAACTT-CCATTAGATCTTGCTTTTTCTG 112192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572858096608200