Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2144 158 1e-32 seq368 131 2e-24 seq1342 111 2e-18 >seq2144 Length=147109 Score = 158 bits (174), Expect = 1e-32 Identities = 325/476 (68%), Gaps = 7/476 (1%) Strand=Plus/Plus Query 1573766 CGACTTTGGCCTCCCGTGGATCGAAAAGTATCGCCCTATGGTGCTCGACGACATTGTCGG 1573825 |||||||| |||||| |||||||||| ||||| | ||| |||| | || || Sbjct 93269 CGACTTTGAGGCGCCGTGGGTCGAAAAGTACCGCCCGCGCCTTCTCT-CGACGTCGTGGG 93327 Query 1573826 CAACGAGCACGCCGTCGCCTATCTCAGAGCGCTGGCTGCCGACGGCGACATGCCCAACCT 1573885 |||| || | | ||| |||| ||| |||| | ||| ||||| | || | Sbjct 93328 CAACCGTGACACTATGGCCAGTCTCCAAGCCATGGCACGGGCCGGTAACATGACGAATTT 93387 Query 1573886 CTTGCTGGCGGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGT 1573945 | || | ||||| ||| |||| |||||||| |||||||| |||||| ||||| | Sbjct 93388 AATCCTCTCTGGTCCTCCCCGCACTGGCAAGACGACGAGCATTTTGTGTCTCGCGCGCGA 93447 Query 1573946 CCTCTTGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGG 1574005 | | || || || | | | || ||||||||||| ||||| |||||||| || || Sbjct 93448 GTTGCTCGGTCCGAGCGTCAAGCAAGCAGTGCTCGAACTGAACGCATCGGACGATCGTGG 93507 Query 1574006 CGTCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGAC-CTGCCGC 1574064 ||||| ||||| | || |||||| || ||| | | ||| || || | Sbjct 93508 TATCGACACGGTGCGGACGAAGATCAAGATGTTTGCGCAGCAGAAGGT-GACGCTTCCTC 93566 Query 1574065 CCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGC 1574124 |||| ||||||||| | |||| |||||||| ||||||| | || | |||||||||| Sbjct 93567 CCGGCCGCCACAAGCTCGTCATTCTCGACGAAGCCGACTCGATGACTGCTGCGGCCCAGC 93626 Query 1574125 AGGCCCTGCGGTCCACCATGGAAAAGCACACCA-ACACGACGCGCTTTGCCCTGGCGTGC 1574183 |||| |||| ||| |||| || | || ||| ||||||||||| |||| ||| Sbjct 93627 AGGCTTTGCGTCGCACGATGG--AATCTTTTCAGCCACCACGCGCTTTGCATTGGCTTGC 93684 Query 1574184 AACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTT 1574239 |||| ||| | | | | || || ||| |||| ||||| ||||| ||| | ||||| Sbjct 93685 AACAACTCGACCAAGATTATTGA-GCCATCCAGAGTCGGTGCGCGATTTTACGCTT 93739 >seq368 Length=262043 Score = 131 bits (144), Expect = 2e-24 Identities = 225/323 (70%), Gaps = 9/323 (3%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 || || | ||| || || ||||| ||| |||||||| |||||||||| ||| |||||| Sbjct 27993 GCTTTCGAGTATTCTCCAACGCGTTTCTCAAAAAAGTTTGTCTTGCCCTGGAGAGAGATC 28052 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | |||||||| ||| ||||| | | |||| ||| ||| ||||| Sbjct 28053 ATGTCCATCCAATCGAATGGGTTCTTTGCATGGTAGATCTTGGATACTCCCAGCGAGTAA 28112 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| || || || ||||| || |||||| ||||||||||||| | ||||||||| || Sbjct 28113 AGCAGACGATCAGCCACAAATTCAATGTACAGGCACATGAGGCCCGAGTTCATGCCAATC 28172 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 ||| | ||||| ||||| || | ||| ||||| | || ||| | || || ||| ||| Sbjct 28173 AGCTCGACCGGGAGCGAGTCACGCACGAACTCGTGTTCAATCGCCACAGCATCGCGAATG 28232 Query 868931 ATCTGCCTGGGCACGTCGG----CCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCA 868986 || | | ||||| ||| | | ||||| |||| | | | ||| | ||||| Sbjct 28233 ATTT---CGTGCACG-CGGTATTCTGGCAGCTTGGTGACCAATTTGGAGTACAAAAGGCA 28288 Query 868987 GGCAAAGTCGCAGTGCA-ACCCT 869008 |||||||| ||||| ||||| Sbjct 28289 CGCAAAGTCCGTGTGCATACCCT 28311 Score = 129 bits (142), Expect = 7e-24 Identities = 199/283 (70%), Gaps = 11/283 (4%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| || || || | ||||| |||| || || ||||| | |||||||| Sbjct 28307 ACCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTTAGACCAGGCATTAAACCGCGCTT 28366 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||||||||||| |||||| ||| |||||||| ||||| || || || ||||| Sbjct 28367 CTTGAGCCAAAAGATGGAGCAGAATGAGCCAGAGAAAAAAATGCCTTCAACTGCAGCAAA 28426 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGAT----CCACTTCATCG 869354 | | | ||||| || | | || | ||| ||| || ||| |||||||| | Sbjct 28427 GGCCAAAAGCCGTTCTGGATAG--GAAGAGACCC-----GTGGATCGCACCACTTCAGAG 28479 Query 869355 CCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCT 869414 |||||| || ||||| | || | || | || ||||| || || | || ||||||| Sbjct 28480 CCCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAGCACGTAGTAGATGGTCCT 28539 Query 869415 TTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 | || || ||| |||| ||| ||||| |||| ||||| || Sbjct 28540 TCTCAATCGCGTCTTTGATATACGTGTCAATCAAAAGCGAGTA 28582 >seq1342 Length=132421 Score = 111 bits (122), Expect = 2e-18 Identities = 193/288 (67%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 || |||||||| ||||||||||| ||||||||||| | ||| || | || ||| || ||| Sbjct 2076 TGATCGACGTACCGCGCCGTGTCATTAAAGACGCGCAACATTGGAATGATGCCATTCGAC 2017 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 ||||| ||||| | |||| | || ||| || | |||||| | ||| Sbjct 2016 GACCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCACGAATGTTGTGCATACTGATCCCG 1957 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || ||||||||| | || || ||| ||| || || ||||||||||| || ||||| || Sbjct 1956 ATCCCGCCGGCCCATTTCGAAATGCACGCACATTGCTTGAGCGTGTCATAAATGCCTTCA 1897 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 | |||||||||||||||| | || | | ||||| Sbjct 1896 ANNNNNNNNNNNNNNNNNNNNNAGAGAAAGCACGACGAGGGTAANGGACGAGGAGTGCCT 1837 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATG 1630353 ||||| |||||||| || ||||| ||| || || | | |||||||| Sbjct 1836 GCGTTAAAGAGCGTCGGTGTCGCGTGGGTAAAGAATTTCTGCGACATG 1789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106961529961305