Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1301 181 1e-40 seq1422 123 2e-23 seq1342 107 2e-18 seq312 107 2e-18 seq1110 95.1 1e-14 seq1525 84.2 2e-11 >seq1301 Length=515170 Score = 181 bits (200), Expect = 1e-40 Identities = 1191/1900 (63%), Gaps = 95/1900 (5%) Strand=Plus/Plus Query 138150 AGATTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACAT 138209 || || ||| || |||||||| || |||||| | || || || | || |||||||| Sbjct 331443 AGTTTGATCAACCGTAAACTTGATAGCATCAACAGCCGGACGAGTACGCAAGTAATACAT 331502 Query 138210 TCCCGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGT 138269 || || || || ||| | ||| |||| | || || ||||| | || | || Sbjct 331503 ACCAGTCTTCAAACCAAGCTTCCAACCGTAAAAATGCATTGAAGTCAACTTCGAAAAGGT 331562 Query 138270 CGGTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAAT 138329 |||| || | ||||| || |||||| ||||| |||||||| || |||||| Sbjct 331563 TGGTTCGGCAATGTGAATGTTCAAACTTTGACTTTGATCAATGAAAGCACCACGATCAGC 331622 Query 138330 GGCCATGTTAATTAAATTTTTACTTTTC-----ATCTCCCACACGGTCTTGTATAGATCA 138384 |||| || ||| | | |||||| || ||||| || |||||||| | || Sbjct 331623 AGCCAAGTCAATAA-----TGACTTTTTGAGAAATTTCCCAAACTGTCTTGTACAAGTCC 331677 Query 138385 CGAATATGTCGCGGTATTGTTGCAATATTTTGAA-TG---CTCCCGTTGGCCGCAATGAT 138440 | | | |||| || | | ||| ||||| | || | |||| | |||||||| Sbjct 331678 TTCAATTCTTGCGGGATGCTGGGAATCTTTTGTACTGAACCACCCG----CAGCAATGAT 331733 Query 138441 GCGATTTCTCATGTCATCGTTGTACAGATTCAACTTGA-TCAAGTCGTTTATCAGATATC 138499 |||||| ||||| || || ||| || | | || | |||| || || |||| ||| Sbjct 331734 GCGATTCTTCATGGATTCATTCCACA-ATCCCAATTCAGTCAAATCCTTCATCAAGTATT 331792 Query 138500 TGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAG 138559 || | | || |||||||| || || || |||||| |||||||||| ||||||| Sbjct 331793 GATTGACAATTTGGAATTCACCAGCTAAAACACGACGAGTGTAAATGTTGGAAGTGAAAG 331852 Query 138560 GCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCA 138619 ||||||| |||| |||| || ||||| |||| || | || ||||||||| || | Sbjct 331853 GCTCAAAGCATTCATTGTAACCAAGAATTTGAGAGGTAGAAGCAGTCGGCATGGGAGCAA 331912 Query 138620 CCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGT-TCCTTGAGCGACGACCAGTCC 138678 || | ||||| || | ||| || | | || | |||| | | ||||| ||| Sbjct 331913 GTAACAAGGAATTACGAACACCATG-TTCAGAAATCTTAGCCTTCAAAGCTGACCAATCC 331971 Query 138679 CACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGA 138738 ||||| ||| ||| | |||||||| || || || || | ||| || | || Sbjct 331972 CACAAGTCGGAAGGGGTCACATTCCACATGTCATATTGCAAAACACCCTTGCTCACAGGG 332031 Query 138739 CTGCCTTCGTACG---AATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCG 138795 || || ||| | || || | | ||| ||| ||||| || || || Sbjct 332032 CTACCCGGGTAAGTTTGATAGTGTCCTTCAA---TTTGAGCCAATTCACAAGAAGCTTCC 332088 Query 138796 AGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAAT---CGGGCCTCGGCG 138852 | ||||||||||| || || || || |||| ||| |||| || || ||| Sbjct 332089 AAGGCACCATAGTAGATGGTCTCAAAGATTTGCTTATT---CAATTGACGAGC----GCG 332141 Query 138853 CTC----TCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCAC 138908 || || | ||||| || | || |||| || || || | ||||| || || | Sbjct 332142 TTCACAATCAAATGGCATTCGCATCAGAATGAAAGCATCAGCTAATCCTTGAACTCCAAT 332201 Query 138909 TCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTAC 138968 || | || ||||| |||| ||| || || ||| | || ||||| || || Sbjct 332202 ACCAATGGGACGATGACGCATATTAGAACGACGAGCCTGTTCAACTGGGTAATAATTGAC 332261 Query 138969 ATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAA 139028 || ||||| || || || ||| ||||| | ||| || ||| || || Sbjct 332262 GTCAATGATACGATTCAAGTTCTTGGTGACAACCTTGGCAACATGTTTCAATTCTTTGAA 332321 Query 139029 ATCGTATGTGCCCCCGTTGTCGTCGACGACGTC-GACAAATTTGTTGACACAAATCGAGG 139087 ||| | ||| | || || | ||| | | | | ||| | ||| || | Sbjct 332322 ATCAAAAGTGTTC---TTATCCTTGACAAAGGCAGGCAA----------AGCAATAGAAG 332368 Query 139088 CTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAAT 139147 | | ||||| || || | || || || | |||||| |||||||| | |||||||| Sbjct 332369 CCAAATTGCAAACAGCAATCTCATCAGGAGCCGAGTATTCAACAATTTCAGTACACAAAT 332428 Query 139148 TACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGT 139207 | ||| ||||| || || || |||||||||||||| || || |||||||| |||| Sbjct 332429 TGGAACATTTGATGGTTCCCAAGTTTTGTTGATTGCTCTTGGAATTGCAAGCATCCTTGT 332488 Query 139208 AAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCC 139267 | ||||| || || || |||||||| ||||| | || | ||| | | ||| Sbjct 332489 ACAGCATGTAAGGAGTACCAGTTTCAACTTGAGATTCCAAAAT--------AGCATTCCA 332540 Query 139268 TAGCTTGTATTTGACGCACGTAAAGTTCGTCGCGC-------------TCGTACTTTTCG 139314 |||| ||||| ||||| | | || || || |||||||| ||| Sbjct 332541 AAGCT----TTTGA-GCACGAACAACACGACGAGCATGACCTTCATTTTCGTACTTCTCG 332595 Query 139315 TAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACAC 139374 || || | || ||| |||| | | ||||| | | | |||| | | || || Sbjct 332596 TAAAGAGCTTCAAATTCAGCACCCCAAACATCAGACAAACCAGGACATTCATTTGGGCAG 332655 Query 139375 ATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAA 139434 | ||| ||||| | ||| || | || ||| ||||||||| ||| |||||||||| Sbjct 332656 AAGAGGGACCAGTCTTCGTCAGCTTCAACACGCTTCATGAACAAATCATTAATCCACAAA 332715 Query 139435 GCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGG 139494 || | | ||| || || || |||||| || |||| |||| | | Sbjct 332716 GCATAGAACAAGTCACGAGCACGAACTTCTTCCTTCCCAGTGTTCTTCTTCAAATCCAAA 332775 Query 139495 AAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCG---T 139551 || |||||||||||||||||||| ||||||| |||| ||| | || || || Sbjct 332776 AAGTCAAAAACGTCAGCGTGCCACGGTTCCAAGTAGACGGCAAAAGCACCCGGACGCTTA 332835 Query 139552 TTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGA 139611 || ||||||||||| |||| || | | |||||| | || || | ||| || | ||| Sbjct 332836 TTACCACCTTGATCAACGTAACGAGCCGTGTTATTGTAAACACGAAGCATGGGAACAAGA 332895 Query 139612 CCGCTCGCTGTTCCGTTGGTGCTACGGATG---GGACTGTTGCGAGCTCGGACGTCATGT 139668 || | | | || || |||| | ||| | || || ||| || | || || Sbjct 332896 CCATTGGATTGACCATTCGTGCCAGAAATGTACGAAC--CAGC-AGCACGAATGTTGTGA 332952 Query 139669 ACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCG 139728 | || | || || || || || ||||||| || ||| | ||| ||| || || Sbjct 332953 ATGTTCAAACCAATACCACCAGCAGATTTGGAAATCAAAGCACAAGTCTTTAAAGTTTCA 333012 Query 139729 TATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGT 139788 || ||||| || ||| || |||||| | || ||||| || || ||||| || Sbjct 333013 TAAATACCATCAATCGAGTCATCAGACATCGTCAACAAGAAGCAAGAAGACAGTTGAGGA 333072 Query 139789 AGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTC-GACAT 139847 | || || ||||| || || || || |||| || || || |||| ||| Sbjct 333073 TGATTAGTACCGGCATGGAAGAGGGTGGGTGAACCGTGAGT-AAAATACTTTTCACTCAT 333131 Query 139848 CAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCG 139907 || | ||||| ||| || || |||| || | ||||| || || | | || || Sbjct 333132 GAAATTGTACGATTCAATAGCCGAGTCAATGTCAGTACCGTGCATTCCTATGCAAACACG 333191 Query 139908 CATCAGCATATGTTGGATCCGTTCGGCCACCGCG-CCCTCGAtttttttCAGATAACCGT 139966 ||| ||||| ||||| ||||| | | |||| | | ||||| ||| || | Sbjct 333192 CATGAGCATGTGTTGAGGACGTTCAACGA-CGCGTTCATTAATTTTCATCAAGTATGCAC 333250 Query 139967 TCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 || || |||||| | |||||||| | || ||| |||| Sbjct 333251 GTTCAAGAGTCTTGAAACCAAAGTAATTGTAATTGTAATC 333290 >seq1422 Length=277306 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || | || ||||| || |||||||| || || || || | Sbjct 271323 ATGCAAATTTTTGTAAAGACTTTGACTGGTAAGACGATTACGCTGGACGTGGAGCCCTCG 271382 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | ||||| ||||||||||| ||||| ||||| || || || ||||| Sbjct 271383 GATTCGATCGACAATGTAAAGCAAAAGATCCAGGACAAGGAAGGCATTCCACCTGATCAG 271442 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||||||||| || || ||||| ||||| | | || | || || || Sbjct 271443 CAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGTCGTACTTTGGCTGACTACAAT 271502 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| || || || ||| |||| | || |||||||||||| Sbjct 271503 ATTCAGAAGGAGTCTACGCTCCACCTGGTACTTCGTTTGCGCGGAGGC 271550 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| || || | || || || || ||||| || || || | || || ||| | Sbjct 271092 ACAATGCAAATTTTCGTCAAGACTCTGACTGGTAAGACGATCACTTTGGACGTGGAACCT 271151 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||| | | || | ||||| ||||||||||| ||||| |||||||| || || ||| Sbjct 271152 TCGGACTCGATCGATAACGTAAAGCAAAAGATCCAGGACAAGGAAGGAATTCCACCTGAT 271211 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || ||| |||| |||||||| || ||||| ||||| | | || | || || Sbjct 271212 CAGCAGCGTCTGATATTTGCCGGCAAGCAGCTCGAGGACGGTCGTACTTTGGCTGACTAC 271271 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || ||||| | || || ||| ||||| | || |||||||||||| Sbjct 271272 AATATACAGAAGGAGTGTACGCTCCACCTGGTGCTTCGTTTGCGCGGAGGC 271322 Score = 82.4 bits (90), Expect = 7e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 ||||| ||||||||||| ||||| ||||| || || || ||||| || ||| |||||||| Sbjct 271626 GTAAAGCAAAAGATCCAGGACAAGGAAGGCATTCCACCTGATCAGCAGCGTCTGATCTTT 271685 Query 24839 GCCGGGAAACAGCTGGAGGA 24858 || || || ||||| ||||| Sbjct 271686 GCTGGCAAGCAGCTCGAGGA 271705 >seq1342 Length=132421 Score = 107 bits (118), Expect = 2e-18 Identities = 153/215 (71%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 139492 AGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGT 139551 || || ||||| || ||||||||||| || || ||||||||||| | | |||||| ||| Sbjct 2148 AGAAATTCAAACACATCAGCGTGCCAGGGCTCTAGATAGATGGCAAACGAGCCTTTGCGT 2089 Query 139552 TT---GCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCC 139608 || ||||||||||||||||| || | | | ||| || ||||||||||| || Sbjct 2088 TTCCCGCCACCTTGATCGACGTACCGCGCCGTGTCATTAAAGACGCGCAACATTGGAATG 2029 Query 139609 AGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGT 139668 | || ||| | ||||| |||| |||||| |||||| || || | || || Sbjct 2028 ATGCCATTCGACGACCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCACGAATGTTGTGC 1969 Query 139669 ACATTGATGCCGATTCCGCCGCCAAATTTGGATAT 139703 | | |||| ||||| |||||| | |||| || || Sbjct 1968 ATACTGATCCCGATCCCGCCGGCCCATTTCGAAAT 1934 >seq312 Length=309945 Score = 107 bits (118), Expect = 2e-18 Identities = 147/204 (72%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 138478 ATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCC-AATACTCGACG 138536 |||| || || |||||||| |||||| || | ||| || || ||| || || || || Sbjct 19141 ATCAGCTCTTTCATCAGATACTTGTTTACGATCGTAAACTCGCCAGCCCAAGACGCGGCG 19082 Query 138537 AACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGT 138596 | ||| |||||| || || ||||||| |||||||||||| |||| || ||||| || Sbjct 19081 ATTGTACATGTTGGACGTAAAGGGCTCAATCGATTCGTTGTTGCCCAAGATTTGAGCGGT 19022 Query 138597 GGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCG 138656 | ||| || |||||| ||| ||||| || || ||||| | || || || ||| Sbjct 19021 CGACGCCGTGGGCATGGGCGCGACCAAGAGCGAGTTCCGGAGCCCATGCTGCATGACCTT 18962 Query 138657 TTCCTTGAGCGACGACCAGTCCCA 138680 |||||| || | || ||| ||||| Sbjct 18961 TTCCTTCAGTGCCGCCCAATCCCA 18938 >seq1110 Length=486086 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || ||| | || || || || |||||||| || || ||| | | Sbjct 256103 ATGCAGATTTTTGTCAAGACGTTGACGGGCAAGACCATTACGCTGGACGTGGAACCGTCA 256162 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | ||||| || || ||||| ||||| ||||| || || || || || Sbjct 256163 GACAGCATTGACAATGTAAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGACCAG 256222 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT-TCGAGAAACATGTCAGATTATAA 24882 || |||||||||||||| || || || || || ||| | || || | || || || Sbjct 256223 CAGCGTTTGATCTTTGCTGGCAAGCAACTTGAAGATGGCCGTTCACTTG-CGGACTACAA 256281 Query 24883 CATTCAAAAGG 24893 ||||||||||| Sbjct 256282 CATTCAAAAGG 256292 >seq1525 Length=339361 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864 |||||| || || ||||||||||||||||| ||||| || || || || || || | Sbjct 204935 AGGAATTCCCCCGGATCAACAACGTTTGATTTTTGCTGGTAAGCAACTTGAAGACGGACG 204876 Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCG 24924 | | | || || || ||||| ||||||||||| || || |||||||| | || ||||| Sbjct 204875 TACCCTTTCCGACTACAACATCCAAAAGGAATCAACTCTTCACTTGGTTCTTCGCTTGCG 204816 Query 24925 CGGAGG 24930 || || Sbjct 204815 TGGTGG 204810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449885424646200