Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2144 158 2e-32 seq368 149 1e-29 seq1526 104 4e-16 >seq2144 Length=147109 Score = 158 bits (174), Expect = 2e-32 Identities = 332/482 (69%), Gaps = 15/482 (3%) Strand=Plus/Plus Query 2018901 GCCGACTTTGGCCTCCCGTGGATCGAAAAGTACCGCCCGACAGTGCTCGACGACATCGTG 2018960 |||||||||| |||||| ||||||||||||||||| | ||| |||| ||||| Sbjct 93267 GCCGACTTTGAGGCGCCGTGGGTCGAAAAGTACCGCCCGCGCCTTCTCT-CGACGTCGTG 93325 Query 2018961 GGCAACGAGCACGCCGTTGCCTACCTCAAGGCGCTGGCCGCCGACGGCAACATGCCCAAC 2019020 |||||| || | | ||| ||| | || |||| | ||| |||||| | || Sbjct 93326 GGCAACCGTGACACTATGGCCAGTCTCCAAGCCATGGCACGGGCCGGTAACATGACGAAT 93385 Query 2019021 CTCTTGCTGGCGGGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGC 2019080 | | || | || || ||| |||| |||||||| |||||||| ||| || |||||| Sbjct 93386 TTAATCCTCTCTGGTCCTCCCCGCACTGGCAAGACGACGAGCATTTTGTGTCTCGCGCGC 93445 Query 2019081 GTGCTCTTGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGC 2019140 | | | | || || || | | | || ||||||||||| || || || ||||| || Sbjct 93446 GAGTTGCTCGGTCCGAGCGTCAAGCAAGCAGTGCTCGAACTGAACGCATCGGACGATCGT 93505 Query 2019141 GGCGTGGACGTCGTGCGTAGAATCATCAAGCATCACGCTT-CG-AAAAGAA-TCGAC-CT 2019196 || | ||| ||||| | | |||||| | | || || | |||| ||| || Sbjct 93506 GGTATCGACACGGTGCGGACGAAGATCAAG----ATGTTTGCGCAGCAGAAGGTGACGCT 93561 Query 2019197 GCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGC 2019256 || ||||||||||||||| | |||| ||||| || ||||||| | || | ||||| Sbjct 93562 TCCTCCCGGCCGCCACAAGCTCGTCATTCTCGACGAAGCCGACTCGATGACTGCTGCGGC 93621 Query 2019257 CCAGCAGGCCCTCCGATCG-ACCATGGAA-AAGTACACCAACACGACGCGGTTTGCGCTG 2019314 ||||||||| | || ||| || |||||| | || | ||| ||||| ||||| || Sbjct 93622 CCAGCAGGCTTTGCG-TCGCACGATGGAATCTTTTCAGC--CACCACGCGCTTTGCATTG 93678 Query 2019315 GCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGC 2019374 || ||||||| ||| | | | | || | |||| ||||||| || ||||| || || ||| Sbjct 93679 GCTTGCAACAACTCGACCAAGATTATTG-AGCCATCCAGAGTCGGTGCGCGATTTTACGC 93737 Query 2019375 TT 2019376 || Sbjct 93738 TT 93739 >seq368 Length=262043 Score = 149 bits (164), Expect = 1e-29 Identities = 233/332 (70%), Gaps = 11/332 (3%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || || || | ||||| ||||| || || ||||| | |||||||| Sbjct 28307 ACCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTTAGACCAGGCATTAAACCGCGCTT 28366 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||||||||||| ||||| ||| |||||||| ||||| || || || ||||| Sbjct 28367 CTTGAGCCAAAAGATGGAGCAGAATGAGCCAGAGAAAAAAATGCCTTCAACTGCAGCAAA 28426 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGAT----CCACTTCATCG 794515 | | | ||||| || | | | | || ||| || ||| |||||||| | Sbjct 28427 GGCCAAAAGCCGTTCTGGATA--GGAAGAGACCC-----GTGGATCGCACCACTTCAGAG 28479 Query 794516 CCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCT 794575 |||| | || ||||| | || | || | || ||||| || || | || ||||||| Sbjct 28480 CCCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAGCACGTAGTAGATGGTCCT 28539 Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 |||| | || ||| |||| || ||||| || | |||||||| || ||||| || | Sbjct 28540 TCTCAATCGCGTCTTTGATATACGTGTCAATCAAAAGCGAGTACACTTCCGAGTGTATAT 28599 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 | ||||| ||||| || || || ||||||||| Sbjct 28600 TCTCGATTGCGATTTGAAACCCGTAAAAGCAG 28631 Score = 125 bits (138), Expect = 1e-22 Identities = 177/249 (71%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951 |||||| || || | || || || ||||| ||| |||||||| |||||||||| ||| Sbjct 27986 GACGCCAGCTTTCGAGTATTCTCCAACGCGTTTCTCAAAAAAGTTTGTCTTGCCCTGGAG 28045 Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAG 794011 ||||||| |||||||| ||| ||||| | ||||| ||| || || Sbjct 28046 AGAGATCATGTCCATCCAATCGAATGGGTTCTTTGCATGGTAGATCTTGGATACTCCCAG 28105 Query 794012 CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071 ||| |||||| || || || || |||||||||||| ||||||||||| | | |||||| Sbjct 28106 CGAGTAAAGCAGACGATCAGCCACAAATTCAATGTACAGGCACATGAGGCCCGAGTTCAT 28165 Query 794072 GCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 ||| || ||| | || || ||||| || | || ||||| | || ||| | || || || Sbjct 28166 GCCAATCAGCTCGACCGGGAGCGAGTCACGCACGAACTCGTGTTCAATCGCCACAGCATC 28225 Query 794132 GATGATGAT 794140 | ||||| Sbjct 28226 GCGAATGAT 28234 Score = 96.9 bits (106), Expect = 5e-14 Identities = 167/235 (71%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 796185 GGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGAT 796244 ||| || || ||| |||||||||||| || || || || || ||||| || ||||| || Sbjct 28670 GGCTAGATTTTCATTCACGATGCCGTCACTAGCAGCAAAGAAAGCGAGCACATGCTTAAT 28729 Query 796245 AAAGTGACGCTCGTCGTCGCTGA-GCGAGACCCAGTGGACCGTGTCG-GCGCCGAGGTCG 796302 || | |||||||| ||| ||| || || |||| | | ||| || || || ||| Sbjct 28730 GAAATAACGCTCGTTGTCCGTGAGGCTAG-CCCAATCTTTCAGATCGTGCACC-AGATCG 28787 Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATA-TCCGTTG 796361 | ||||| || ||||| || || || || || || |||||||||| ||| | | || || Sbjct 28788 AGTTCCTCAGCTGTCCAGAAAGAAGCTTCAGCTTTCTTGTACATCTGCCACACTTCG-TG 28846 Query 796362 GTAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTCG 796416 | | ||||| || || ||||||||||||| ||| | || | ||||||| Sbjct 28847 CTCCTGAATGGGAAAGAGCACAAAGCGATTGGAATTCGCAACAAGAAACGGCTCG 28901 >seq1526 Length=132622 Score = 104 bits (114), Expect = 4e-16 Identities = 223/329 (68%), Gaps = 7/329 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||||||||| || ||||| | ||| ||| ||| | |||||||| | |||||||| Sbjct 118709 ACCTTCGTCACGGCTGATTAGTTCATTGGAGAAGGTCAAACCGGGCATCAACCCGCGCTT 118768 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTG--CCCGAGAAAAAGATGCCCTCGACGGCGGCA 794457 ||| | ||| || |||| ||| || || || || || ||||| || || ||||| ||| Sbjct 118769 CTTCAACCAGAAAATGG--CAGCAAATGAACCGGAAAAGAAGATACCTTCCACGGCAGCA 118826 Query 794458 AAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCC 794517 || | || || || || ||||| | | || | || | ||||| ||| ||| Sbjct 118827 AAAGCAACAAGGCGTTCTCCAAAACAG-CTAG--TTTGATTTTCAATCCAACGCATAGCC 118883 Query 794518 CACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTC 794577 || ||| |||| || | || | || | ||||| ||||| || ||| | | Sbjct 118884 CAGTCTCCCTTCTTGCGAACACAAGGGATGGTGTCAATGGCATTGAAAAGGAATTTACGC 118943 Query 794578 TCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTT 794637 || || ||||| | |||||| || |||||||| ||||| | || | ||| |||||| Sbjct 118944 TCAACTGGGTCACGAATGTAGGTATCAATGAGGAGAGAGTACATTTCAGCGTGAATGTTT 119003 Query 794638 TCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || || ||| ||||| || |||||||| Sbjct 119004 TCAATCATGATTTGGAACCCGTAAAAGCA 119032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916016099075435