Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1422 113 4e-20 >seq1422 Length=277306 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| || ||||| || || || || ||||| | || |||| | Sbjct 271323 ATGCAAATTTTTGTAAAGACTTTGACTGGTAAGACGATTACGCTGGACGTGGAGCCCTCG 271382 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||| | ||| | | ||||| |||||||| || || |||||| | || |||||| Sbjct 271383 GATTCGATCGACAATGTAAAGCAAAAGATCCAGGACAAGGAAGGCATTCCACCTGATCAG 271442 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||| ||||||| || |||| |||||||| Sbjct 271443 CAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGTCGTACTTTGGCTGACTACAAT 271502 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| |||||||||||| | ||| |||| | | ||||| || || Sbjct 271503 ATTCAGAAGGAGTCTACGCTCCACCTGGTACTTCGTTTGCGCGGAGG 271549 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||| ||||| ||| | || || || || || || | || ||| || Sbjct 271094 AATGCAAATTTTCGTCAAGACTCTGACTGGTAAGACGATCACTTTGGACGTGGAACCTTC 271153 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || | ||| | ||||| |||||||| || || ||||| | || ||||| Sbjct 271154 GGACTCGATCGATAACGTAAAGCAAAAGATCCAGGACAAGGAAGGAATTCCACCTGATCA 271213 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | ||| || || ||||| ||||||| || |||| |||||||| Sbjct 271214 GCAGCGTCTGATATTTGCCGGCAAGCAGCTCGAGGACGGTCGTACTTTGGCTGACTACAA 271273 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || ||||||| |||| | ||| ||||| | | ||||| || || Sbjct 271274 TATACAGAAGGAGTGTACGCTCCACCTGGTGCTTCGTTTGCGCGGAGG 271321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398866275261685