Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq100 522 3e-143 >seq100 Length=112360 Score = 522 bits (578), Expect = 3e-143 Identities = 690/957 (72%), Gaps = 0/957 (0%) Strand=Plus/Plus Query 157078 AACCGTTTGTATGTTGGTTGGTTCGGTGTGCTTATGATTCCAACATTGCTTGCAGCAACT 157137 ||| | || || |||| |||||||| || | |||||||| || | | |||| ||| Sbjct 40179 AACAGATTATACATTGGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACT 40238 Query 157138 ATCTGCTTCATTGTTGCATTCGTAGCAGCACCTCCCGTTGATATCGACGGTATTCGCGAA 157197 | || |||||| | | || | ||||| ||||| || || || || || |||||||| Sbjct 40239 ACATGTTTCATTATCGGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAG 40298 Query 157198 CCAGTTGCTGGTTCTCTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCTTCT 157257 ||||| ||||| || || | ||||| |||||||| || | || || || ||||| | Sbjct 40299 CCAGTAGCTGGATCCCTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGT 40358 Query 157258 TCAAACGCAATCGGTCTTCACTTCTACCCCATCTGGGAAGCAGCATCACTTGATGAGTGG 157317 ||||||||||| ||| |||| || || || || |||||||| || || ||||||| ||| Sbjct 40359 TCAAACGCAATTGGTGTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGG 40418 Query 157318 CTTTACAACGGTGGTCCTTTCCAACTGGTAGTCTTTCACTTCCTGATCGGCATCTATGCC 157377 | || ||||||||||| | |||||| |||| || |||||| | | || | | Sbjct 40419 TTATATAACGGTGGTCCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGT 40478 Query 157378 TATATGGGACGTGAGTGGGAACTTTCTTACCGTTTAGGTATGCGCCCCTGGATCTGTGTT 157437 ||| | || |||||||||||| | | || ||||| |||||||| ||||| | |||| Sbjct 40479 TATTTAGGTCGTGAGTGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTT 40538 Query 157438 GCCTACTCGGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAA 157497 |||| || || ||||| ||||| || | || |||||| | | ||||| | || ||| Sbjct 40539 GCCTTTTCCGCTCCAGTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAA 40598 Query 157498 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGTC 157557 || ||| || |||| ||||||| | || || || || |||||||||| ||| | || Sbjct 40599 GGAAGTTTTTCTGATGGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTT 40658 Query 157558 TTCCAGGCAGAGCACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTA 157617 ||||| || ||||| || || | |||||||| || |||||| || || ||||| || Sbjct 40659 TTCCAAGCCGAGCATAACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTT 40718 Query 157618 TTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTCGT 157677 || || || || || || ||||| ||||||||| | | || ||||| || || ||||| Sbjct 40719 TTTGGAGGTTCATTATTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGT 40778 Query 157678 GAAACAACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACG 157737 ||||| |||||| || |||| || ||||| ||||| || || ||||||||||| || Sbjct 40779 GAAACTTCTGAAAGCGAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACA 40838 Query 157738 TACAACATCGTTGCTGCACACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCATTC 157797 || || || |||||||| ||||| || ||||| | | || || |||||||| || Sbjct 40839 TATAATATTGTTGCTGCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTT 40898 Query 157798 AACAACAGCAGAAGTCTTCACTTCTTCCTCGCCGCATGGCCTGTTGTCGGCATCTGGTTC 157857 || ||| | | ||||||||| | || |||||||| || || || || ||||| Sbjct 40899 AATAACTCACGTTCATTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTA 40958 Query 157858 ACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCC 157917 |||||| | || | || || ||||| || ||| | ||||| || ||||| || || || Sbjct 40959 ACTGCATTAGGAATTAGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCG 41018 Query 157918 ATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTCCTGAACCGCGCTGGT 157977 || ||||| | || || | || | ||||| ||||||||| | | ||| | || | Sbjct 41019 ATTATTGATAGCCAAGGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAAAT 41078 Query 157978 CTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTGGATCTTGCT 158034 ||||| || ||||| |||||||| ||||| || || ||||||||| | ||||||||| Sbjct 41079 CTTGGAATCGAAGTAATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGCT 41135 Score = 410 bits (454), Expect = 1e-109 Identities = 701/1009 (69%), Gaps = 6/1009 (1%) Strand=Plus/Plus Query 158787 GACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTA 158846 || |||||||| ||| || | || || ||||| || |||||||| || || || | Sbjct 28586 GATGACTGGCTAAAAAAAGACAGATTTGTATTTGTAGGATGGTCTGGT-TTATTATTATT 28644 Query 158847 CCCACT-GCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTG 158905 || || ||| | ||| | || || ||| ||||||| | || || | ||| || Sbjct 28645 TCCGTGCGCGTATTTAGCTCTAGGAGGATGGTTTACTGGAATCACATTTGTTACCTCTTG 28704 Query 158906 GTATACACATGGACTCGCTACTTCCTATCTTGAGGGTGCAAACTTTCTTACAGCAGCAGT 158965 |||||| ||||| | |||| |||| | | || ||| || ||| | || || || || Sbjct 28705 GTATACCCATGGCTTAGCTAGCTCCTTTTTAGAAGGTTGTAATTTTTTAACGGCTGCTGT 28764 Query 158966 TTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCA 159025 ||| || |||||| || |||||| |||||| | || ||| | ||||| || || || || Sbjct 28765 TTCAACACCAGCTAATAGTATGGGACATTCTTTACTTCTTTTATGGGGACCAGAAGCGCA 28824 Query 159026 AGGGGATTTCGTCAGG-TGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 159084 ||| |||| || | ||| | || |||| || || |||| ||||| || | |||| Sbjct 28825 AGGAAATTTT-TCTGTATGGTTTAAAATTGGAGGTCTTTGGACATTTGTTGCCTTACACG 28883 Query 159085 GTGCCTTTGCCCTAATTGGTTTCATGCTT-CGCCAGTTTGAACTGGCACGTCTCATCGGT 159143 | || ||||| |||||||| || ||||| || || |||||| | || || | | || Sbjct 28884 GAGCTTTTGCACTAATTGGATTT-TGCTTACGACAATTTGAAATTGCTCGATTAGTAGGA 28942 Query 159144 ATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTC 159203 || || || ||||||||| | || || || | || || || ||||||| ||| || Sbjct 28943 ATTCGACCTTACAATGCTTTAGCATTTTCAGCACCGATCGCCATTTTTGTTTCCGTTTTT 29002 Query 159204 CTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCCGCA 159263 | | || || | || || | || |||||||| || || ||||| || || ||| Sbjct 29003 TTACTTTATCCTTTAGGGCAAGCAAGCTGGTTTTTTGCACCAAGTTTTGGTGTTGCAGCA 29062 Query 159264 ATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACACTAAACCCCTTCCAT 159323 || || | || |||| ||| ||||||| ||||| ||||||||| |||| || |||||| Sbjct 29063 ATTTTTCGATTTTTACTATTCTTACAAGGATTCCATAATTGGACATTAAATCCATTCCAT 29122 Query 159324 ATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTATTCATGGGGTCACA 159383 ||||||||||||||||| | |||| | || | |||| ||| |||||||| | || Sbjct 29123 ATGATGGGAGTTGCTGGAGTATTAGGAGCTGCGTTACTATGTGCAATTCATGGTGCTACT 29182 Query 159384 GTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCA 159443 ||||||||||| | || || |||||||| |||||| || |||| || ||| | Sbjct 29183 GTTGAAAATACTCTTTATGAAGATGGAGATGCAGCAAATACATTTAGAGCCTTTACCCCT 29242 Query 159444 ACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 159503 |||||| ||| || || ||||| ||||| || || ||| | || ||||| || || || Sbjct 29243 ACTCAATCGGAAGAAACATATTCCATGGTTACAGCCAACAGATTTTGGTCACAAATTTTT 29302 Query 159504 GGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTATGTTGTTTGTGCCTGTTATG 159563 || | || ||||| || || | ||| | || || |||||| | ||||| ||||| | Sbjct 29303 GGAGTAGCTTTTTCCAATAAAAGATGGTTACACTTTTTTATGCTATTTGTTCCTGTAACC 29362 Query 159564 GGTCTATGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGAT 159623 ||| ||||| || | || || ||| | || ||||| | || | || || || || Sbjct 29363 GGTTTATGGGCAAGCGCAATAGGAATTGTAGGACTTGCATTAAACTTACGCGCCTATGAC 29422 Query 159624 TTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAAACGTTCTACACCAAG 159683 || | ||||| | |||||||||||||||| ||||| ||||| ||||| || || Sbjct 29423 TTTATTTCGCAAGAATTACGAGCAGCAGAAGATCCGGAATTCGAAACATTCTATACAAAA 29482 Query 159684 AACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAA 159743 || ||| || | ||||||||| || | ||| |||| | || || || |||||| Sbjct 29483 AATATTATTTTAAATGAAGGAATAAGATTATGGATGGCTGCACAAGACCAGCCACATGAA 29542 Query 159744 AACTTCATCTTCCCAGAAGAAGTTCTACCAAGAGGTAACGCATTGTGAT 159792 || | || || |||||||| || ||||| | || ||||| | |||| Sbjct 29543 AATTATATATTTCCAGAAGAGGTATTACCACGTGGAAACGCGCTTTGAT 29591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545258843533200