Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq1301 123 2e-23 seq1355 105 7e-18 >seq1301 Length=515170 Score = 123 bits (136), Expect = 2e-23 Identities = 254/377 (67%), Gaps = 3/377 (1%) Strand=Plus/Plus Query 151082 GGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCTATGCCGATGGGACGA 151141 || || |||| || || || ||||| || || ||||||| || || || ||||||||| Sbjct 332155 GGCATTCGCATCAGAATGAAAGCATCAGCTAATCCTTGAACTCCAATACCAATGGGACGA 332214 Query 151142 TGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTA 151201 || ||||||||||| || ||||| ||||| ||||| ||||| || | Sbjct 332215 TGACGCATATTAGAACGACGAGCCTGTTCAACTGGGTAATAATTGACGTCAATGATACGA 332274 Query 151202 TTCAAACTATTCACTACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAGTATCA 151261 ||||| | || ||| ||| | ||| | |||| || ||||||||||| | Sbjct 332275 TTCAAGTTCTTGGTGACAACCTTGGCAACATGTTTCAATTCTTTGAAATCAAAAGTGTTC 332334 Query 151262 TTA---TTGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCG 151318 ||| |||| | | | | ||||| || || | ||| || || ||| | || || Sbjct 332335 TTATCCTTGACAAAGGCAGGCAAAGCAATAGAAGCCAAATTGCAAACAGCAATCTCATCA 332394 Query 151319 GGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTA 151378 || || | |||| || ||||| | |||||||||| ||||| || ||| | || Sbjct 332395 GGAGCCGAGTATTCAACAATTTCAGTACACAAATTGGAACATTTGATGGTTCCCAAGTTT 332454 Query 151379 CTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCG 151438 ||||||||| ||| |||||||| |||||||| | |||||| || || || ||||| Sbjct 332455 TGTTGATTGCTCTTGGAATTGCAAGCATCCTTGTACAGCATGTAAGGAGTACCAGTTTCA 332514 Query 151439 GCTTGAATTTCTATAAT 151455 ||||| ||| | ||| Sbjct 332515 ACTTGAGATTCCAAAAT 332531 >seq1355 Length=184863 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| || | |||||| || | |||| || || || || || |||||||| ||||| Sbjct 90655 GCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCT 90714 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || || | ||| || | || || |||||| | || ||||||||||| || || || Sbjct 90715 CAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGG 90774 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| ||| || || || | | || | || ||| | || || || Sbjct 90775 AATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAAC 90834 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | ||||| || ||||| || || ||||| || ||||| Sbjct 90835 GTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 90882 Score = 104 bits (114), Expect = 2e-17 Identities = 161/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTT-TGTATGTTGTAATCGC 137242 |||||| || | |||||| || | |||| || || || ||| || |||||||| |||| Sbjct 90883 GCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTTCTGGATGTTGTAGTCGC 90942 Query 137243 TCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 ||| || | ||| || | || || |||||| | || ||||||||||| || || | Sbjct 90943 TCAAAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTG 91002 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | || ||||| ||||| ||| || || || | | || | || ||| | || || | Sbjct 91003 GAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAA 91062 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | |||| ||| | ||||| || ||||| || || ||||| || ||||| Sbjct 91063 CGTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 91111 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| || | |||||| || | |||| || || || || || |||||||| ||||| Sbjct 91112 GCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCT 91171 Query 137244 CATTGTGCTCGA-GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 || || | ||| || | || || |||||| | || ||||||||||| || || | Sbjct 91172 CAAAGTTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTG 91231 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | || ||||| ||||| ||| || || || | | || | || ||| | || |||| Sbjct 91232 GAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGATGGCTCTA 91291 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | || | ||| | ||||| || |||| || ||||| || || ||||| Sbjct 91292 CGTCGAGAGTGATTGTCTTTCCCGTCAGCGTCTTTACAAAAATCTGCAT 91340 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 137256 ||||| || | |||| || || ||||| || |||||||| ||||||| || | | Sbjct 90440 CGCAACACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCG 90499 Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 || || | || || |||||| | || ||||||||||| || || || || ||||| ||| Sbjct 90500 TCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTG 90559 Query 137317 TCGGTAATTTTTTGT-TTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCAC 137375 || ||||| || | || || || | || ||| | | || || |||| ||| | Sbjct 90560 TCCTAAATTTCTTCTGCTTCACTTGTCGATCGAGTC-GGAAGCTCAACGTCAAGAGTAAT 90618 Query 137376 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| || ||||| || || || || || ||||| Sbjct 90619 AGTCTTTCCCGTCAAAGTCTTGACAAAAATCTGCAT 90654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488530778778000