Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_023693.1 Length=148612 Score E Sequences producing significant alignments: (Bits) Value seq1923 84.2 2e-11 >seq1923 Length=74424 Score = 84.2 bits (92), Expect = 2e-11 Identities = 273/415 (66%), Gaps = 13/415 (3%) Strand=Plus/Minus Query 25462 TGGATCATTCCACGCAAGACTACACTCTGAAGTCGGATCGTAATATTCTGTACATTTGTA 25521 || ||||||||| |||| || ||| ||| || | || || ||||| |||||| Sbjct 66528 TGCATCATTCCAGATCAGACAACGCTCATGAGTTGGCGCATAGTAGTCTGTTGTTTTGTA 66469 Query 25522 TTCAAAATCAGCAATATCACTAATCACAACAAAGCCATGAGCGAAACCAGGAGGAATCCA 25581 | ||| || ||| |||| | || | || || || || || || |||||||| Sbjct 66468 TAAAAACTCCGCATAATCAGACAGTACTAGGAAACCGTGCGCAAAGCCCTCTGGAATCCA 66409 Query 25582 AAATTGTGTTTTATTCTTTTCAGATAAGAGAACACCTACCCATTCTCCAAATGTTGGA-- 25639 | |||| ||||||| | | || || | |||| ||||||| ||||| || || Sbjct 66408 CATTTGTTTTTTATTTTCAGCCGACAACAATTCACCAACCCATTGACCAAAAGTAGGTGA 66349 Query 25640 -CTACCAACCCTAATATCTACAGCAACATCATAAACTTCACCAC-GAACACAGCGTACCA 25697 || | | ||| ||| || || |||||| | || ||||| | | ||| || || | Sbjct 66348 GCTTTTA--CGTAA-ATCAACGGCCACATCAAACACCTCACCGCTGGTGACA-CGCACTA 66293 Query 25698 ACTTCCCTTGTGGGTTTTTCTTTTGAAAATGAAGCCCACGTAGAAC-TCCTCGGATAGAA 25756 |||| ||||||| | || ||||| |||| || || | | || | | | | || Sbjct 66292 ACTTACCTTGTGCCTGTTGAATTTGATAATGCAGACCTCTCAACACATTGTTTGCT-GAG 66234 Query 25757 CGTGAATGGTTATCTTGGACAAAGTT---TTGTTTACCTATGTATTGATCATATAAAGCC 25813 || |||||||||||||| ||||| | ||| ||| ||| || ||| | ||| Sbjct 66233 CGGGAATGGTTATCTTGCACAAAACTTACTTGACGACCAATGGCCTGCTCAAACTGAGCA 66174 Query 25814 TGATTAAAACTTTCTAAGAAAAAGCCACGTTCATCTCCGTAAACGTCAGGTTGAA 25868 |||||||| ||||| ||||||| || | ||||| || |||| | |||| || Sbjct 66173 TGATTAAAGCTTTCATAGAAAAAACCTCTATCATCACCAAAAACTTTGGGTTCAA 66119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475417533664800