Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq1415 246 1e-59 >seq1415 Length=39952 Score = 246 bits (272), Expect = 1e-59 Identities = 539/797 (68%), Gaps = 18/797 (2%) Strand=Plus/Plus Query 188771 TTTTAGT---TGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACA-TTGGCTGAT 188826 ||||||| |||||| |||||||||||||| || || |||| ||||| ||| | | | Sbjct 4031 TTTTAGTGATTGGCCCGACTGGTTCAGGTAAGACTTTGCTTGCACAAACCCTTGCCCGCT 4090 Query 188827 ATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTA 188886 | ||| |||| || | | || | ||||| || |||| || |||||||||||||| Sbjct 4091 -TATTAGATGTGCCATTTGTGATGGCGGATGCTACCACTTTGACTGAAGCTGGTTATGTG 4149 Query 188887 GGTGAAGATGTGGAAAACGTATTGCTTC-GTTTAATCCAAGCAGCTGATTACGATATCGA 188945 |||||||| || |||||| | ||| | || | || || ||||| ||| | || Sbjct 4150 GGTGAAGACGTTGAAAACATCATGCAGAAGCTTTTGCAAAAGTGC-GATTATGATGTTGA 4208 Query 188946 ATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAATCAGA 189005 | |||| ||||||| || || || || |||||| | ||||| || || | |||||||| Sbjct 4209 AAAAGCGCAACGTGGTATCGTGTACATTGATGAAATTGATAAGATCTCTCGTAAATCAGA 4268 Query 189006 AAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAAT 189065 | | || |||||||| |||||||| || ||||| || || ||||| | | || | Sbjct 4269 CAATCCCTCTATTACCCGCGATGTATCAGGTGAAGGCGTGCAACAAGCCCTGCTCAAGCT 4328 Query 189066 CATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACCAAGA 189125 ||||| ||||| |||| || || || ||||||||||| ||||| ||| ||||||| Sbjct 4329 TATTGAGGGTACGATTGCCTCTGTACCGCCACAAGGTGGTCGCAAACATCCTAACCAAGA 4388 Query 189126 AATGCTTGAAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCT 189185 | | | ||||||| || |||||| | |||||| |||||| ||||||||||| | Sbjct 4389 GTTTGTGCAGTTAGATACTACAAATATCCTCTTTATTTGTGGTGGCGCGTTTGATGGCTT 4448 Query 189186 TGAAAACATTATCAAGAGACGCGCTACAAAATCAACTTTAGGTTTTGATGATAGTGTAGA 189245 || || | || ||||| | |||| | | ||||| | || | || Sbjct 4449 AGATAAAGTCATTCGCAGACGTTCAGAAAAAGGCGGTATTGGTTTCGGTG---CCGAAGT 4505 Query 189246 TAAAGTACAAGAAGAAATCAAGGATGACAATA----AAGTATTCCAACATCTTCAACCGC 189301 ||| |||||| | ||| | || ||||| |||| || | || | | || Sbjct 4506 CAAAAGCAAAGAAG-ATTCACG--TG-CAATAGGTGAAGTCTTGCGCGATGTAGAGCCTG 4561 Query 189302 AAGATATTGTTAAGTATGGTTTAATTCCAGAATTTATTGGGCGTGTACCAGTAATCGCAA 189361 ||||| | |||||| ||| || ||||| || ||| | || ||| | || | ||||| | Sbjct 4562 AAGATTTGATTAAGTTTGGCTTGATTCCTGAGTTTGTCGGTCGTTTGCCTGCGATCGCTA 4621 Query 189362 CTCTTAACAAACTTGATCGAGATGCATTGATTAACATTTTAACTGAGCCGCAAAACGCTA 189421 || | | || ||| ||| || || |||| || || |||||| |||| || Sbjct 4622 CTTTAGAGTCGCTCGATGAAGAAGCTTTAATTACTATCTTGGTTGAGCCTAAAAATGCGC 4681 Query 189422 TCATTAAACAATATCAGAAATTGTTAGATATGGATGGCGTGGAATTAGAATTCCAAAAAG 189481 ||| || |||||| ||| | || | ||||| || || ||| | ||||||| ||| Sbjct 4682 TCACGAAGCAATATGCCAAACTATTCAAGATGGAAGGTGTCGAACTGGAATTCCGTGAAG 4741 Query 189482 AAGCATTAGAATCAATTGCAGATGAAGCGATTGAACGTAATACTGGTGCTCGCGGATTAC 189541 | || || | ||| | | | ||| |||||||||| || ||||| || ||||| | Sbjct 4742 ATGCCCTACGAGTAATCTCTAAAAAGGCGCTTGAACGTAAAACGGGTGCACGTGGATTGC 4801 Query 189542 AATCCATTATTGAAAAT 189558 || ||||||||| || Sbjct 4802 GCTCGATTATTGAACAT 4818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591866241897920