Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_023738.1 Length=106327 Score E Sequences producing significant alignments: (Bits) Value seq154 107 1e-18 >seq154 Length=42511 Score = 107 bits (118), Expect = 1e-18 Identities = 182/252 (72%), Gaps = 10/252 (4%) Strand=Plus/Minus Query 94876 TCTGTAACCACGGGCTGGAGAAGGTGGGGGATACCGTTGTACGGGGTGAGCTCGACACAT 94935 || || ||||| ||| ||| || || || || || | |||| | | | ||||| ||| Sbjct 16597 TCGGTCACCACCGGCGCGAGCAGATGAGGAATGCCCTCGTACACGCTCATCTCGAG-CAT 16539 Query 94936 -TTGGGGTCGATCATGATGAGTTTGACC-CGATCAGGGGTCGCCCG-GTAGAGCAGCGAA 94992 ||||||||||||| ||| || ||| || | || ||| || ||| |||||||| Sbjct 16538 CTTGGGGTCGATCAGGATCAGGCGGACGTCG--CGGGCCTCGGCCTTGTACAGCAGCGAC 16481 Query 94993 ACCAGCATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCCAGCCACCAG-CAG 95051 | | ||| | ||||||| ||||||||||| ||||||| ||| |||||||| ||| Sbjct 16480 AGGATCATCGCGTTGATGCCCACCGACTTGCCCGAACCGGTCGTGCCGGCCACCAGGCAG 16421 Query 95052 ATGCGGCATCTTGGCCAGGTTCAGGGA-GACGTCCTTACCCTCGACGTCCTTGCCCACTG 95110 |||||||||||||||||| || | | ||| | | ||| ||| ||||||||||| Sbjct 16420 -TGCGGCATCTTGGCCAGG-TCGGCCACGACCGGCATGCCCACGATGTCCTTGCCCAGGC 16363 Query 95111 CCACGGTCAACG 95122 ||| ||||| || Sbjct 16362 CCATGGTCAGCG 16351 Score = 105 bits (116), Expect = 5e-18 Identities = 149/205 (73%), Gaps = 11/205 (5%) Strand=Plus/Minus Query 94572 GAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGG 94631 ||| || || |||| || | |||| |||||| ||||| || | ||| ||||| || || Sbjct 16985 GAAGGAGAGTCGCGTCGGGATGTTGGCCTTGATCAGGCCGGTGATCACGTCCACCGACGG 16926 Query 94632 CCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGAC 94691 |||||||| ||||||| || || ||||| || ||||| |||||||| || | ||| | Sbjct 16925 ACGCTGCGTGGCCAGGATCAGGTGGATGCCCGCGGCACGGGCCTTCTGGGCCAGGCGCGC 16866 Query 94692 AAT--GTTGGCCTCAACCTCTTTCTTGTAGCCAC--CCATCATGAGGTCCGCGAGTTCAT 94747 || ||| |||| | || ||||| |||| ||||||||||||| || | || | Sbjct 16865 GATCAGTT--CCTCGATCT---TCTTGC--CCACGACCATCATGAGGTCGGCCAACTCGT 16813 Query 94748 CCACCACTACCACGATGTAGGGGAG 94772 | | ||| || ||||||| ||| || Sbjct 16812 CGATCACCACGACGATGTGGGGCAG 16788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340112625572720