Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_023744.1 Length=60588 Score E Sequences producing significant alignments: (Bits) Value seq1612 100 1e-16 >seq1612 Length=217819 Score = 100 bits (110), Expect = 1e-16 Identities = 353/536 (66%), Gaps = 34/536 (6%) Strand=Plus/Plus Query 49774 GGTAACCATTTCATCGAACTATGCCTGGACGAAACCGGCCGGGTGTGGCTGTTCCTGCAC 49833 || ||||| |||||||| | |||||||| || ||| |||||| | | ||||| Sbjct 127445 GGCAACCACTTCATCGAGGTCTGCCTGGATGAGGGGGGCTTCGTGTGGTTCATGCTGCAT 127504 Query 49834 TCCGGGTCGCGTGGCGTCGGCAACAAGATCGCCCAAAAGCACATCAAGGTCGCGCAGAAA 49893 || || ||||| ||||| |||||| ||||| | | | |||| || | ||| |||| Sbjct 127505 TCGGGCTCGCGCGGCGTGGGCAACGCGATCGGCACGATGTTCATCGAGCTGGCGAAGAA- 127563 Query 49894 CTCATGGAC-CGCTGGTGGATTCAGCTCCCAAGC--CCCGAC------CTGGCGTACTTG 49944 |||| || || | || ||| |||| | ||||| || || ||||| Sbjct 127564 -----GGACGCGATGCAGCAT-CAGG--CCAACCTGCCCGATACGAATCTCGCCTACTTC 127615 Query 49945 CCGCAAGGCACACCGGAGTTCGCCGACTATCTGCGGGAGCTGCACTGGGCGCAGCGGTTC 50004 | ||||| | | | |||| |||||| |||| | | || |||||||||| |||| Sbjct 127616 GAGGAAGGCGCGAAGTACTTCGGCGACTACGTGCGCGCGGTGAGCTGGGCGCAGAAGTTC 127675 Query 50005 GCGCTAGAG-AACCGCGCCGAAATGATGGACCGTTTCGCTATCGTGTTCGGCGAGTGGAT 50063 || | ||| || |||| |||||| ||| || |||| | ||||||| || Sbjct 127676 GC-CGAGACCAATCGCGAGCTGATGATGCGCCGCGTC---ATCG-GCGCGGCGAG--GAA 127728 Query 50064 CGGGCACCCCA--CCGG-CGGGGCGCTGGTGGAAACCACGGTGAACACGCACCACAACTA 50120 | | | ||| ||| || ||| | | || | ||||||| ||||||||||| Sbjct 127729 GGTGATCGCCAAGCCGTTCGAGGCCCACATCGAGGC---GGTGAACTGCCACCACAACTA 127785 Query 50121 CACGACGCAGGAACGGCACGGCGGCCGCGACGTGTGGCTGACCCGCAAGGGCGCCATCGA 50180 | | | |||| ||| ||||| ||||||| |||||||||||||||| | Sbjct 127786 CGTGCAGAAGGAGACCCACTTCGGCCAGGACGTGTTCGTGACCCGCAAGGGCGCGGTGAG 127845 Query 50181 CGCGCACGCCGGCGTGATGGGCCTGATCCCGGGCAGCATGGGCACCCCGTCATACGTGGT 50240 |||| | ||| |||||| | || || |||||||||||| | | ||| | || Sbjct 127846 CGCGAAGCAGGGCCAGATGGGGATCATTCCCGGCAGCATGGGCGCGCGCAGCTACATCGT 127905 Query 50241 GCGCGGCAAGGGCAACCCGGCCGGGCTGTGCTCGGCGC-CGCACGGCGCCGGCCGC 50295 |||||||||||||||| ||| | ||| | | || ||||||| ||||||||| Sbjct 127906 GCGCGGCAAGGGCAACGCGG-AGAGCTTCGACAGCTGCTCGCACGGGGCCGGCCGC 127960 Score = 86.0 bits (94), Expect = 2e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 49419 GATGCCCGACGCGCACGCCGGCAAGGGTTCATCGGTCGGCACCGTCATCCCGACTATCGA 49478 ||||||||| | |||| |||| || || |||| || | || |||||||| | | Sbjct 127090 GATGCCCGATGTCCACGTGGGCATCGGCGCAACGGTGGGGTCGGTGATCCCGACGCTGAA 127149 Query 49479 CGCCGTGATCCCGGCCGCGGTGGGCGTGGACATCGGCTGCGGGATGATCGCC 49530 || | |||||||||||||| || ||||||||||||||||||||||| ||| Sbjct 127150 GGCAATCATCCCGGCCGCGGTCGGGGTGGACATCGGCTGCGGGATGATGGCC 127201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193755018551500