Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_024369.2 Length=41569 Score E Sequences producing significant alignments: (Bits) Value seq1716 91.5 4e-14 >seq1716 Length=36447 Score = 91.5 bits (100), Expect = 4e-14 Identities = 178/263 (68%), Gaps = 9/263 (3%) Strand=Plus/Minus Query 38189 AAGTAATGGCAAGCAGAGGTGTAAACAAGGTGATCTTAATTGGTCACCTTGGTCAAGATC 38248 || |||||||||| ||||||||| || || ||||| ||| | | || | || | Sbjct 12282 AAATAATGGCAAG------TGTAAACAAAGTAATTTTAATGGGTAATTTAGGCCGTGACC 12229 Query 38249 CAGAGGTGCGCTATCTACCAAGCGGCGGCGCAGTGGCAAACATCACAATAGCAACGTCTG 38308 | ||||| ||||| | |||| |||| ||||| || ||| ||| || || || | | Sbjct 12228 CGGAGGTACGCTACATGCCAAATGGCGAAGCAGTCGCCAACTTCAGCATTGCCACCACCG 12169 Query 38309 AGGTTTGGCGGGATAAGCAAACCGGACAGCCAAAAGAGAAAACAGAGTGGCACCGAGTTA 38368 | ||| ||||| | | || ||| | |||| ||||| || |||||| || Sbjct 12168 AAAACTGGAAAGATAA---ATCTGGCCAGAAACAAGAAAAAACTGAATGGCACAATATTG 12112 Query 38369 CTTTGTTTGGGAAGCTGGCTGAAGTTGCTGGCGAATACCTTCGAAAAGGATCTCATGTTT 38428 ||| |||| || |||||| | |||||||||||||| |||||| | |||| Sbjct 12111 TCATGTACCGGAAACTAGCTGAAATCGCTGGCGAATACCTCAAAAAAGGTCGCCCCGTTT 12052 Query 38429 ATATTGAAGGCCAGCTTGAAACT 38451 |||||||||||| || ||||| Sbjct 12051 ATATTGAAGGCCGCCTACAAACT 12029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132895783244630