Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1422 136 4e-27 seq312 127 2e-24 seq1775 125 7e-24 seq1355 123 2e-23 seq1301 102 8e-17 seq1110 93.3 4e-14 >seq1422 Length=277306 Score = 136 bits (150), Expect = 4e-27 Identities = 153/203 (75%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||| ||||| |||||||| || ||| || |||| ||||||||||||||||| Sbjct 271519 GTAGACTCCTTCTGAATATTGTAGTCAGCCAAAGT--ACGACCGTCCTCGAGCTGCTTGC 271462 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || |||||||| || || || |||||||||||||| ||||||||||| Sbjct 271461 CAGCAAAGATCAGACGCTGCTGATCAGGTGGAATGCCTTCCTTGTCCTGGATCTTTTGCT 271402 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | || || | |||||||||||| | || | || || || |||| || Sbjct 271401 TTACATTGTCGATCGAATCCGAGGGCTCCACGTCCAGCGTAATCGTCTTACCAGTCAAAG 271342 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 | ||||| ||||| |||||| || Sbjct 271341 TCTTTACAAAAATTTGCATGCCT 271319 Score = 134 bits (148), Expect = 1e-26 Identities = 148/195 (76%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 133468 ACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGCCCGC 133525 |||| |||||||||||||| || ||| || |||| |||||||||||||||||| || Sbjct 271287 ACTCCTTCTGTATATTGTAGTCAGCCAAAGT--ACGACCGTCCTCGAGCTGCTTGCCGGC 271230 Query 133526 GTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAG 133585 | || || |||||||| || || || || ||||||||||| |||||||||||| | Sbjct 271229 AAATATCAGACGCTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTTAC 271170 Query 133586 CTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTT 133645 | || | || ||| | || |||||||| | |||| || || || |||||||| || Sbjct 271169 GTTATCGATCGAGTCCGAAGGTTCCACGTCCAAAGTGATCGTCTTACCAGTCAGAGTCTT 271110 Query 133646 TACGAAAATCTGCAT 133660 |||||||| ||||| Sbjct 271109 GACGAAAATTTGCAT 271095 Score = 82.4 bits (90), Expect = 7e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| || | || || |||||||| || || || ||||||||||| Sbjct 271706 GTCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGTGGAATGCCTTCCTT 271647 Query 133565 GTCGGTGATCTTTTGCTT 133582 ||| |||||||||||| Sbjct 271646 GTCCTGGATCTTTTGCTT 271629 >seq312 Length=309945 Score = 127 bits (140), Expect = 2e-24 Identities = 195/276 (71%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 148196 AATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCGATCAGATA 148255 ||||||||| |||| || | ||| | | | | || ||||| || | |||||||| Sbjct 19181 AATCTGATTCCGCACTTGGGGCGTCCAGATGCCCAATTCAATCAGCTCTTTCATCAGATA 19122 Query 148256 CTGATTCACCACCTGAAACTCGCCGGCG-AGCACGCGCCGCAGATACACGTTGCTCGTAA 148314 || || || | | ||||||||| || | ||||| || |||| |||| ||||| Sbjct 19121 CTTGTTTACGATCGTAAACTCGCCAGCCCAAGACGCGGCGATTGTACATGTTGGACGTAA 19062 Query 148315 ACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACG 148374 | || |||| ||| |||||||||||||| || || ||||||| |||||||||||| || Sbjct 19061 AGGGCTCAATCGATTCGTTGTTGCCCAAGATTTGAGCGGTCGACGCCGTGGGCATGGGCG 19002 Query 148375 CTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGT 148434 | |||| |||||||| || | || | | | | || |||||| |||||||| | Sbjct 19001 CGACCAAGAGCGAGTTCCGGAGCCCATGCTGCATGACCTTTTCCTTCAGTGCCGCCCAAT 18942 Query 148435 CCCAGAGCGGCGACG--GTGTCACGTTCCACATGTC 148468 ||||||| ||| | | || ||| ||||||||| Sbjct 18941 CCCAGAGGCCCGATGACGCGTGACGCCCCACATGTC 18906 >seq1775 Length=332822 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || |||||||| |||||||| || ||| || | | | || |||||||||||||| Sbjct 274968 GTCGATTCTTTCTGAATATTGTAGTCTGCCAAAGTCCGGCCA-TCTTCGAGCTGCTTGCC 274910 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || |||||||||||||| || || ||||||||||| || || || || Sbjct 274909 AGCAAAGATCAGACGCTGCTGGTCGGGTGGAATCCCTTCCTTGTCCTGAATTTTCTGTTT 274850 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| | || | |||||||||||| | || | ||| ||||| ||||| || Sbjct 274849 GACATTGTCAATGCTATCCGAGGGCTCCACGTCCAGCGTAATGGTCTTGCCCGTCAGGGT 274790 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 274789 CTTGACGAAAATCTGCAT 274772 >seq1355 Length=184863 Score = 123 bits (136), Expect = 2e-23 Identities = 151/204 (74%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||| ||||| ||||| || ||||| |||| || || ||| |||||| | ||||||| Sbjct 90685 GGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGT--ACGGCCGTCCTCCAACTGCTTG 90742 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || || |||| || || |||||||| || || || ||||||||||| ||||| ||| Sbjct 90743 CCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTGAATCTTCTGC 90802 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | || | || ||||| ||||| ||||| | |||| || || || |||| | Sbjct 90803 TTCACGTTGTCGATCGAGTCGGAAGGCTCAACGTCAAGAGTGATTGTCTTTCCCGTCAAA 90862 Query 133641 GTTTTTACGAAAATCTGCATGGCT 133664 || || ||||||||||||||| || Sbjct 90863 GTCTTGACGAAAATCTGCATGCCT 90886 Score = 122 bits (134), Expect = 8e-23 Identities = 152/205 (74%), Gaps = 5/205 (2%) Strand=Plus/Plus Query 133463 GGTGGACTC-TTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTT 133519 ||| ||||| |||||| || ||||| |||| || || ||| |||||| | |||||| Sbjct 90913 GGTCGACTCCTTTCTGGATGTTGTAGTCGCTCAAAGT--ACGGCCGTCCTCCAACTGCTT 90970 Query 133520 GCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG 133579 ||| || |||| || || |||||||| || || || ||||||||||| ||||| || Sbjct 90971 GCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTGAATCTTCTG 91030 Query 133580 CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639 ||| | | || | || ||||| ||||| ||||| | |||| || || || |||| Sbjct 91031 CTTCACGTTGTCGATCGAGTCGGAAGGCTCAACGTCAAGAGTGATTGTCTTTCCCGTCAA 91090 Query 133640 AGTTTTTACGAAAATCTGCATGGCT 133664 ||| || ||||||||||||||| || Sbjct 91091 AGTCTTGACGAAAATCTGCATGCCT 91115 Score = 120 bits (132), Expect = 3e-22 Identities = 148/200 (74%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||| ||||| ||||| || ||||| |||| || || ||| |||||| | ||||||| Sbjct 91142 GGTCGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTT-ACGGCCGTCCTCCAACTGCTTG 91200 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || || |||| || || |||||||| || || || ||||||||||| ||||| ||| Sbjct 91201 CCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTGAATCTTCTGC 91260 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | || | || ||| | ||||| ||||||| |||| || || || ||||| Sbjct 91261 TTCACGTTATCGATCGAGTCAGATGGCTCTACGTCGAGAGTGATTGTCTTTCCCGTCAGC 91320 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || ||||| ||||||||||| Sbjct 91321 GTCTTTACAAAAATCTGCAT 91340 Score = 102 bits (112), Expect = 8e-17 Identities = 149/205 (73%), Gaps = 8/205 (4%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACG--AGTCCTCGAGCTGCTTGC 133521 || ||||||||||| || ||||| |||| || | | ||| |||||| | |||||||| Sbjct 90458 GTCGACTCTTTCTGGATGTTGTAGTCGCTCA--GAGTACGGCCGTCCTCCAACTGCTTGC 90515 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA--TCTTTTG 133579 | || |||| || || |||||||| || || || ||||||||||| | |||| || Sbjct 90516 CAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTAAATTTCTTCTG 90575 Query 133580 CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639 ||| | || || | || ||||| |||| ||||| | || | || || || |||| Sbjct 90576 CTTCA-CTTGTCGATCGAGTCGG-AAGCTCAACGTCAAGAGTAATAGTCTTTCCCGTCAA 90633 Query 133640 AGTTTTTACGAAAATCTGCATGGCT 133664 ||| || || |||||||||||| || Sbjct 90634 AGTCTTGACAAAAATCTGCATGCCT 90658 >seq1301 Length=515170 Score = 102 bits (112), Expect = 8e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 148821 GCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCG 148880 || ||||| || | |||||| || || ||||||| || || ||| || || || || Sbjct 332359 GCAATAGAAGCCAAATTGCAAACAGCAATCTCATCAGGAGCCGAGTATTCAACAATTTCA 332418 Query 148881 GCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCAC 148940 | |||| |||| |||||||| |||| ||| | ||||||||||||| ||||| Sbjct 332419 GTACACAAATTGGAACATTTGATGGTTCCCAAGTTTTGTTGATTGCTCTTGGAATTGCAA 332478 Query 148941 GCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCA 148989 || ||||||||||||||||| || |||||||| || || | ||||| Sbjct 332479 GCATCCTTGTACAGCATGTAAGGAGTACCAGTTTCAACTTGAGATTCCA 332527 >seq1110 Length=486086 Score = 93.3 bits (102), Expect = 4e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || || |||||||| || | || | ||||||||||| || || |||||||||||| Sbjct 256257 TCTTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTG 256198 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| || ||||| | | |||| |||| | || |||||||| | || | | Sbjct 256197 TCCTGGATTTTCTGCTTTACATTGTCAATGCTGTCTGACGGTTCCACGTCCAGCGTAATG 256138 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 || ||||| |||| || || || |||||||||||| || Sbjct 256137 GTCTTGCCCGTCAACGTCTTGACAAAAATCTGCATGACT 256099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483407717424600