Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1301 183 7e-41 seq1890 93.3 1e-13 >seq1301 Length=515170 Score = 183 bits (202), Expect = 7e-41 Identities = 567/863 (66%), Gaps = 21/863 (2%) Strand=Plus/Minus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGG-CGAGATCAT 110362 || ||||||||||| |||||||||||||| || || | | |||| || | || | Sbjct 333275 TACTTTGGTTTCAAGACTCTTGAACGTGCATACTTGATGAAAATTAATGAACGCG-TCGT 333217 Query 110363 TGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAA 110422 ||||||||||||||||||| | | |||||| || || || || || ||| ||| | Sbjct 333216 TGAACGTCCTCAACACATGCTCATGCGTGTTTGCATAGGAATGCACGGTACTGACATTGA 333157 Query 110423 AGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTAC 110482 | | |||||||| || || | | ||| ||||| | || ||| | | | || || Sbjct 333156 CTCGGCTATTGAATCGTACAATTTCATGAGTGAAAAGTATTTTACTCACGGTTCACCCAC 333097 Query 110483 CCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAG-GAATTA 110541 ||| || | || || |||||| ||| || |||||||| ||||| | | || Sbjct 333096 CCTCTTCCATGCCGGTACTAATCATCCTCAACTGTCTTCTTGC-TTCTTGTTGACGATGT 333038 Query 110542 ACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGA-AACTGCTCTTATTTCTAAA 110600 ||||| || ||||| ||||||||||| || ||||||| |||| | ||||| ||| Sbjct 333037 CTGATGACTCGATTGATGGTATTTATGAAACT-TTAAAGACTTGTGCTTTGATTTCCAAA 332979 Query 110601 AACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGG--AGCAAATATC- 110657 |||| || |||||| | || |||| | ||||| | || | | || || Sbjct 332978 TCTGCTGGTGGTATTGGTTTGAACATTCACAACATTCGTGCTGCTGGTTCGTACATTTCT 332919 Query 110658 -GCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACAC 110716 ||| |||| ||| || | ||| |||||||| ||| | | || | ||| |||| Sbjct 332918 GGCA----CGAATGGTCAATCCAATGGTCTTGTTCCCATGCTTCGTGTTTACAATAACAC 332863 Query 110717 TGCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGA 110773 || || || |||||||||| |||| | || | ||||| |||| | || Sbjct 332862 GGCTCGTTACGTTGATCAAGGTGGTAATAAGCGTCCGGGTGCTTTTGCCGTCTACTTGGA 332803 Query 110774 ACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTA-AAAATCA-AGGATTTGAA 110831 ||| ||||| | || | ||||| || || || || | | || | || || ||| Sbjct 332802 ACCGTGGCACGCTGACGTTTTTGACTTTTTGGA--TTTGAAGAAGAACACTGGGAAGGAA 332745 Query 110832 GAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGT 110891 ||| | || ||||| || || ||||| |||||||| ||||| |||||||| ||| Sbjct 332744 GAAGTTCGTGCTCGTGACTTGTTCTATGCTTTGTGGATTAATGATTTGTTCATGAAGCGT 332685 Query 110892 GTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGAT 110951 ||| ||| | | ||||| || | || || || | ||||||| | |||||| Sbjct 332684 GTTGAAGCTGACGAAGACTGGTCCCTCTTCTGCCCAAATGAATGTCCTGGTTTGTCTGAT 332625 Query 110952 GTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGC 111011 || | || || ||||||| |||||||| || || ||||| ||||| | ||| Sbjct 332624 GTTTGGGGTGCTGAATTTGAAGCTCTTTACGAGAAGTACGAAAATGAAGGTCATGCTCGT 332565 Query 111012 AAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGA 111071 ||| |||||| | |||||| || | ||||| |||||||||||||| Sbjct 332564 CGTGTTGTTCGTGCTCAAAAGCTTTGGAATGCTATTTTGGAATCTCAAGTTGAAACTGGT 332505 Query 111072 ACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGA 111131 |||||||| || |||| || ||| | ||| ||| |||||| || || ||| Sbjct 332504 ACTCCTTACATGCTGTACAAGGATGCTTGCAATTCCAAGAGCAATCAACAAAACTTGGGA 332445 Query 111132 ACAATTAAGTCTAGTAATTTGTG 111154 || || || | | |||||||| Sbjct 332444 ACCATCAAATGTTCCAATTTGTG 332422 >seq1890 Length=541308 Score = 93.3 bits (102), Expect = 1e-13 Identities = 135/187 (72%), Gaps = 3/187 (2%) Strand=Plus/Minus Query 167202 AATATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCG 167261 || |||| ||| || ||| | ||||| || ||| |||| | | | |||||||||||| Sbjct 492760 AAGATTTGAAATGAACACATCAAATCAGCATCAATGCTCATAATAGCTCCAGCATTATCG 492701 Query 167262 AATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAA 167320 ||||| | | || |||||||| || ||||| | || || || | || || ||| || Sbjct 492700 AATTC-TCCACAATAATTTGGAGCCGAAAAGATGGTCACCAAGTGTCGCTTTGCAAAGAA 492642 Query 167321 TTCATAACCATCTTCAACAACTTCATGGGCACG-TATTACAAGTTCAACTCCTAtttttt 167379 ||| || |||||||||||||||| ||| || || | ||| | ||| || | ||||| Sbjct 492641 TTCGTACCCATCTTCAACAACTTGATGAGCTCGACAAATCAATTCCAAGTCATGTTTTTC 492582 Query 167380 tAAGAAA 167386 |||||| Sbjct 492581 CAAGAAA 492575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186779878925565