Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1110 104 2e-17 seq1525 86.0 4e-12 seq1422 84.2 1e-11 >seq1110 Length=486086 Score = 104 bits (114), Expect = 2e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 33562 TTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATC 33621 ||||| |||||||| || | |||| || | || || | ||| || || ||||| ||| Sbjct 256290 TTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATC 256231 Query 33622 AAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681 ||||||||||| || |||| | ||||| ||||| |||||||| || |||| ||| Sbjct 256230 AAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTT-TACATTGTC 256172 Query 33682 -ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740 | | |||| | ||||||||| | ||| || || || || || ||||| || ||||| Sbjct 256171 AATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACAAA 256112 Query 33741 GATCTGCAT 33749 |||||||| Sbjct 256111 AATCTGCAT 256103 >seq1525 Length=339361 Score = 86.0 bits (94), Expect = 4e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | ||| || | ||||| || ||||| || ||||| |||||||| |||| Sbjct 204808 CACCACCACGCAAGCGAAGAACCAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAGTCGG 204867 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATC 33635 | || || ||| |||| || | ||| || || |||||||||||||| || ||||| Sbjct 204868 AAAGGGTACGTCCGTCTTCAAGTTGCTTACCAGCAAAAATCAAACGTTGTTGATC 204922 >seq1422 Length=277306 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | |||||| | ||||| || || || | ||| || ||||| ||||| || | Sbjct 271321 CCTCCGCGCAAACGAAGCACCAGGTGGAGCGTACACTCCTTCTGTATATTGTAGTCAGCC 271262 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || |||| || | || || |||||||| |||| |||||||||||| | || Sbjct 271261 AAAGTACGACCGTCCTCGAGCTGCTTGCCGGCAAATATCAGACGCTGCTGATCAGGTGGA 271202 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACG 33702 | ||||| ||||| || || || || | || | | ||| | ||||||| Sbjct 271201 ATTCCTTCCTTGTCCTGGATCTTTTGCTTTACGTTATCGATCGAGTCCGAAGGTTCCACG 271142 Query 33703 TCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTT 33753 || | |||||||| ||||| || | || || || || || ||||| ||| Sbjct 271141 TCCAAAGTGATCGTCTTACCAGTCAGAGTCTTGACGAAAATTTGCATTGTT 271091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328695326836800