Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1355 125 2e-23 seq1422 113 1e-19 >seq1355 Length=184863 Score = 125 bits (138), Expect = 2e-23 Identities = 162/220 (74%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231 ||||| ||||| ||| ||||| || ||||| || |||||| | || || || ||||| Sbjct 91337 CAGAT-TTTTGTAAAGACGCTGACGGGAAAGACAATCACTCTCGACGTAGAGCCATCTGA 91279 Query 206232 CACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 | | |||| || ||||| |||||||| || || ||||||||| || ||| || Sbjct 91278 CTCGATCGATAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGACCAGCA 91219 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAG-GACTTTGGCCGATTACAACG 206350 | | || || || || || ||||||||||| || || | |||||| ||| |||||| Sbjct 91218 ACGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTAACTTTGAGCGACTACAACA 91159 Query 206351 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||| ||||| || ||||||||||| ||| | || || Sbjct 91158 TCCAGAAGGAGTCGACCCTTCACCTTGTGTTGCGTCTGCG 91119 Score = 116 bits (128), Expect = 9e-21 Identities = 158/219 (72%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || ||||| || |||||| | || || || ||| ||| Sbjct 91108 CAGATTTTCGTCAAGACTTTGACGGGAAAGACAATCACTCTTGACGTTGAGCCTTCCGAC 91049 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||| |||||||| || || ||||||||| || ||| ||| Sbjct 91048 TCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGACCAGCAA 90989 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || || || ||||||||||| || || | |||||| ||| |||||| || Sbjct 90988 CGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTTTGAGCGACTACAACATC 90929 Query 206353 CAGAAA-GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||| ||||| || ||||||||||| ||| | || || Sbjct 90928 CAGAAAGGAGTCGACCCTTCACCTTGTGTTGCGTCTGCG 90890 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || ||||| || |||||| | || || || ||| ||| Sbjct 90879 CAGATTTTCGTCAAGACTTTGACGGGAAAGACAATCACTCTTGACGTTGAGCCTTCCGAC 90820 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||| |||||||| || || ||||||||| || ||| ||| Sbjct 90819 TCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGACCAGCAA 90760 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || || || ||||||||||| || || | ||| || ||| |||||| || Sbjct 90759 CGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTGAGCGACTACAACATC 90700 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| || ||||||||||| ||| | || || Sbjct 90699 CAGAAGGAGTCGACCCTTCACCTTGTGTTGCGTCTGCG 90662 Score = 107 bits (118), Expect = 5e-18 Identities = 158/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || ||||| || || ||| | || || || ||| ||| Sbjct 90651 CAGATTTTTGTCAAGACTTTGACGGGAAAGACTATTACTCTTGACGTTGAGC-TTCCGAC 90593 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGA--TTCAAGAAAAAGAAGGAATTTTGCCGGACGCTC 206290 | |||| ||| ||||| |||| || | || || ||||||||| || ||| | Sbjct 90592 TCGATCGACA-AGTGAAGCAGAAGAAATTTAGGACAAGGAAGGAATTCCACCTGACCAGC 90534 Query 206291 AAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 206350 || | || || || || || ||||||||||| || || | ||| || ||| |||||| Sbjct 90533 AACGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTGAGCGACTACAACA 90474 Query 206351 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||||| |||||||||||||| ||| | || || Sbjct 90473 TCCAGAAAGAGTCGACTCTTCACCTTGTGTTGCGCCTGCG 90434 >seq1422 Length=277306 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || || || || |||||||||||||| |||||| ||| ||| | |||| Sbjct 271109 CAAGACTCTGACTGGTAAGACGATCACTTTGGACGTGGAACCTTCGGACTCGATCGATAA 271168 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 |||||||||||||| || || || ||||||||| || || || | || || || Sbjct 271169 CGTAAAGCAAAAGATCCAGGACAAGGAAGGAATTCCACCTGATCAGCAGCGTCTGATATT 271228 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| |||||| | || || || | |||||||| || ||||| | ||||| |||| Sbjct 271229 TGCCGGCAAGCAGCTCGAGGACGGTCGTACTTTGGCTGACTACAATATACAGAAGGAGTG 271288 Query 206364 TACTCTTCACCTTGT 206378 ||| || ||||| || Sbjct 271289 TACGCTCCACCTGGT 271303 Score = 84.2 bits (92), Expect = 5e-11 Identities = 140/201 (70%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 206179 TTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || | || || || ||||| || |||| ||||| || || | | Sbjct 271331 TTTTGTAAAGACTTTGACTGGTAAGACGATTACGCTGGACGTGGAGCCCTCGGATTCGAT 271390 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| |||||||||||||| || || || ||||| ||| || || || | || Sbjct 271391 CGACAATGTAAAGCAAAAGATCCAGGACAAGGAAGGCATTCCACCTGATCAGCAGCGTCT 271450 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||||| || || |||||| | || || || | |||||||| || ||||| | ||||| Sbjct 271451 GATCTTTGCTGGCAAGCAGCTCGAGGACGGTCGTACTTTGGCTGACTACAATATTCAGAA 271510 Query 206358 AGAGTCTACTCTTCACCTTGT 206378 |||||||| || ||||| || Sbjct 271511 GGAGTCTACGCTCCACCTGGT 271531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181788017398965