Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq100 493 4e-135 >seq100 Length=112360 Score = 493 bits (546), Expect = 4e-135 Identities = 675/943 (72%), Gaps = 0/943 (0%) Strand=Plus/Plus Query 19545 TTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACCATCTGCTTCATTA 19604 |||| ||||| ||| |||||||||| || | |||| || | || ||||||| Sbjct 40192 TTGGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACTACATGTTTCATTA 40251 Query 19605 TTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTATCCGGTA 19664 | | || || || ||||| ||||| ||||||||||| || ||||| || ||| | || Sbjct 40252 TCGGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCTGGAT 40311 Query 19665 GCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAATGCCATCG 19724 ||| | |||||||||||||| || | ||| | | |||| || || || || | Sbjct 40312 CCCTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCAATTG 40371 Query 19725 GACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGG 19784 | | || || || || || ||||||||| ||| ||||||||||| | || ||||| | Sbjct 40372 GTGTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAACGGTG 40431 Query 19785 GACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACATGGGACGAG 19844 | || | ||||| | || || |||||| | | || | | ||| | || || | Sbjct 40432 GTCCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGTCGTG 40491 Query 19845 AGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTC 19904 |||||||| | |||| ||| |||||||| | |||||||||| |||||||| || |||| Sbjct 40492 AGTGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCCGCTC 40551 Query 19905 CGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTGGTCAGGGTAGCTTCTCCG 19964 | || || || || | || || || | | || ||| | || || || || || || | Sbjct 40552 CAGTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTTTCTG 40611 Query 19965 ATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAAC 20024 ||| ||||||||| || || || || || || |||| |||||| || ||||||||||| | Sbjct 40612 ATGGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCCGAGC 40671 Query 20025 ATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCAC 20084 ||||||| | ||||| || || |||||| |||||| ||||| || || || || ||| Sbjct 40672 ATAACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGTTCAT 40731 Query 20085 TATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAGACTACTGAAC 20144 |||| ||| |||||||| || | || || || || || | ||||| ||| ||||| Sbjct 40732 TATTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCTGAAA 40791 Query 20145 AGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAG 20204 ||| | || ||||| ||||| ||||| ||||||||||| || ||||| || || | Sbjct 40792 GCGAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATATTGTTG 40851 Query 20205 CCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTT 20264 | ||||| || || || ||| | || || || |||||||| ||| || || |||| Sbjct 40852 CTGCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCACGTT 40911 Query 20265 CTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCG 20324 | ||||||||||| | ||||| ||||| || || || |||||||| |||| || || Sbjct 40912 CATTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATTAGGAA 40971 Query 20325 TTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACA 20384 || ||||||||| ||||| | ||||| || |||||||| || || || | || | | Sbjct 40972 TTAGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCC 41031 Query 20385 ATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGG 20444 | || | || ||| | |||||||| || ||| | || | || ||||| || | || | Sbjct 41032 AAGGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAATCGAAG 41091 Query 20445 TGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 | ||||||||||| |||||||||||||||||| | || ||||| Sbjct 41092 TAATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGC 41134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148824973704570