Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq100 499 9e-137 >seq100 Length=112360 Score = 499 bits (552), Expect = 9e-137 Identities = 677/944 (72%), Gaps = 0/944 (0%) Strand=Plus/Plus Query 28673 TTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACCATCTGCTTCATTA 28732 |||| ||||| ||| |||||||||| || | |||| || | || ||||||| Sbjct 40192 TTGGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACTACATGTTTCATTA 40251 Query 28733 TTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTCGCTGGAA 28792 | | || || || || || ||||| ||||||||||| || ||||| || || |||||| Sbjct 40252 TCGGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCTGGAT 40311 Query 28793 GTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAGCAGCAATGCCATCG 28852 || | |||||||||||||| || | ||| | | | || || || || || | Sbjct 40312 CCCTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCAATTG 40371 Query 28853 GACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGG 28912 | | || || || || || ||||||||| ||| ||||||||||| | || ||||| | Sbjct 40372 GTGTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAACGGTG 40431 Query 28913 GACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCG 28972 | || | ||||| | || || |||||| | | || || | ||| | || || | Sbjct 40432 GTCCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGTCGTG 40491 Query 28973 AGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTC 29032 |||||||| | |||| ||| |||||||| | || ||||||| ||| || | || |||| Sbjct 40492 AGTGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCCGCTC 40551 Query 29033 CCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCG 29092 | || || || ||| | || || ||| | | || || | || ||||| |||| | Sbjct 40552 CAGTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTTTCTG 40611 Query 29093 ACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAAC 29152 | | |||||||| || |||||||| || || |||| |||| | || ||||||||||| | Sbjct 40612 ATGGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCCGAGC 40671 Query 29153 ATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGC 29212 ||||||| | ||||| || || |||||| || || |||||||| || || || || Sbjct 40672 ATAACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGTTCAT 40731 Query 29213 TATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGCGTGAGACGACTGAAG 29272 ||||| |||||||||||| || | || || || || || | ||||| || ||||| Sbjct 40732 TATTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCTGAAA 40791 Query 29273 ACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAG 29332 | || | || ||||| ||||| ||||||||||||||||| || ||||| || || | Sbjct 40792 GCGAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATATTGTTG 40851 Query 29333 CCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTT 29392 | |||||||| || || ||| | || || || ||||| || ||| ||||| |||| Sbjct 40852 CTGCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCACGTT 40911 Query 29393 CTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCG 29452 | ||||||||||| | ||||| ||||| || || || |||||||| |||| || || Sbjct 40912 CATTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATTAGGAA 40971 Query 29453 TTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACA 29512 || ||||||||| ||||| | ||||| ||||||||||| || ||| || | || | | Sbjct 40972 TTAGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCC 41031 Query 29513 ATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAG 29572 | || | || ||||| |||||||| ||| || | || | || || || || | |||| Sbjct 41032 AAGGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAATCGAAG 41091 Query 29573 TAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 |||||||||| ||||||||||||||||||||| | ||||| ||| Sbjct 41092 TAATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGCT 41135 Score = 95.1 bits (104), Expect = 4e-15 Identities = 120/160 (75%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 29460 AATGGCGTTTAATCTGAA-CGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTC 29518 |||||| ||| | || || ||| ||||||||||| || ||| || | || | | | || Sbjct 112357 AATGGCCTTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCAAGGAA 112298 Query 29519 GTGTCATTAATACTTGGGCT-GATGT-TCTCAATCGCGCTAACCTCGGCTTTGAAGTAAT 29576 | || ||||| |||||||| ||| | | | || | || || || || | |||||||| Sbjct 112297 GAGTAATTAACACTTGGGCCAGATATATGTAAACAGAGCAAATCTTGGAATCGAAGTAAT 112238 Query 29577 GCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 |||||| ||||||||||||||||| ||| | ||||| ||| Sbjct 112237 GCATGAACGTAATGCTCATAACTT-CCATTAGATCTTGCT 112199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146661829319090