Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq100 506 6e-139 >seq100 Length=112360 Score = 506 bits (560), Expect = 6e-139 Identities = 697/975 (71%), Gaps = 0/975 (0%) Strand=Plus/Plus Query 18733 TGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTCCG 18792 ||| | || ||| ||| ||| | | || || || ||||| ||| |||||||||| Sbjct 40161 TGGATTACTAGTTTAGAAAACAGATTATACATTGGATGGTTCGGAGTTGTGATGATTCCT 40220 Query 18793 TGTCTCCTTGCAGCTACTATTTGTTTCATTATTGCCTTCATTGCTGCACCTCCTGTAGAC 18852 || | ||||||||| ||||||||||| | || || || || ||||| |||||| Sbjct 40221 ACGCTTTTAACAGCTACTACATGTTTCATTATCGGTTTTATCGCAGCTCCTCCAGTAGAC 40280 Query 18853 ATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCG 18912 |||||||| || |||||||| || || || || | |||||||||||||| || | Sbjct 40281 ATTGATGGAATTCGCGAGCCAGTAGCTGGATCCCTATTATATGGAAACAACATTATTACA 40340 Query 18913 GGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCT 18972 ||| | | |||| || || || || || | || || || || || ||||||||| Sbjct 40341 GGATCAATTATTCCTAGTTCAAACGCAATTGGTGTTCATTTTTATCCTATATGGGAAGCT 40400 Query 18973 AATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTC 19032 ||| ||||||||||| | || ||||| || || | ||||| | || || |||||| Sbjct 40401 GCTTCTATTGATGAATGGTTATATAACGGTGGTCCATATCAACTGATAGTATTACACTTC 40460 Query 19033 CTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATG 19092 | | || || | ||| | || || ||||||||| | |||| ||| |||| ||| Sbjct 40461 TTAACAGGTGTAGCTTGTTATTTAGGTCGTGAGTGGGAATTAAGCTTTCGCTTAGGAATG 40520 Query 19093 CGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTT 19152 ||||||||||||| |||||||| || ||||| || || ||||| | || || ||| | Sbjct 40521 CGCCCTTGGATTTTTGTTGCCTTTTCCGCTCCAGTAGCTGCAGCAACAGCTGTATTCTTA 40580 Query 19153 GTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACG 19212 | ||||| | || ||||| ||| || | ||||||||| || ||| || || Sbjct 40581 ATTTATCCGATAGGACAAGGAAGTTTTTCTGATGGTATGCCTTTAGGGATTTCAGGGACT 40640 Query 19213 TTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATG 19272 || |||| |||| | || ||||| || || |||||||| | ||||| || || |||||| Sbjct 40641 TTTAACTTCATGTTAGTTTTCCAAGCCGAGCATAACATATTAATGCATCCATTTCACATG 40700 Query 19273 CTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTT 19332 ||||| ||||| || || || || ||| ||||| ||| |||||||| || | || Sbjct 40701 GCTGGTGTAGCTGGAGTTTTTGGAGGTTCATTATTTTCTGCAATGCACGGATCTTTAGTA 40760 Query 19333 ACGTCCTCGCTTGTGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTT 19392 || || || || | ||||||||| ||||| | ||| | || ||||| ||||| ||| Sbjct 40761 ACTTCATCAATTATTCGTGAAACTTCTGAAAGCGAATCACCAAATTATGGATACAAATTT 40820 Query 19393 GGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATT 19452 || ||||||||||| || ||||| |||||||||||||| || ||||| || | | ||| Sbjct 40821 GGACAAGAAGAAGAAACATATAATATTGTTGCTGCTCACGGATATTTCGGAAGATTAATT 40880 Query 19453 TTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCT 19512 || || |||||| || || || ||||| |||| ||||| || ||||| ||||| Sbjct 40881 TTTCAATACGCAAGTTTTAATAACTCACGTTCATTACACTTCTTCTTAGCTGCATGGCCA 40940 Query 19513 GTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGC 19572 || ||||| |||||||| | || | || | || || ||||| || ||||| || || Sbjct 40941 GTAGTTGGAATTTGGTTAACTGCATTAGGAATTAGTACAATGGCCTTTAACTTAAACGGA 41000 Query 19573 TTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGAC 19632 ||||||||||| || || || |||| | | | || | || ||| | |||||||| || Sbjct 41001 TTTAACTTTAATCAATCGATTATTGATAGCCAAGGAAGAGTAATTAACACTTGGGCAGAT 41060 Query 19633 ATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTC 19692 ||| | || | || || || || | || |||||||| ||||||||||||||||||||| Sbjct 41061 ATTGTAAACAGAGCAAATCTTGGAATCGAAGTAATGCATGAACGTAATGCTCATAACTTC 41120 Query 19693 CCACTTGATTTGGCT 19707 ||| | ||| | ||| Sbjct 41121 CCATTAGATCTTGCT 41135 Score = 80.6 bits (88), Expect = 8e-11 Identities = 102/138 (74%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 19558 TTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATT 19617 || ||||| || || ||||||||||| || || || |||| | | | || | || ||| Sbjct 112349 TTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCAAGGAAGAGTAATT 112290 Query 19618 GATACTTGGGCT-GACAT-TCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAAC 19675 | |||||||| || || | | || | || || || || | || |||||||| |||| Sbjct 112289 AACACTTGGGCCAGATATATGTAAACAGAGCAAATCTTGGAATCGAAGTAATGCATGAAC 112230 Query 19676 GTAATGCTCATAACTTCC 19693 |||||||||||||||||| Sbjct 112229 GTAATGCTCATAACTTCC 112212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141145171152570