Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1775 104 2e-17 seq1355 93.3 4e-14 seq1301 93.3 4e-14 seq1422 87.8 2e-12 >seq1775 Length=332822 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| || | || | | || ||||| ||||| |||||||| || || Sbjct 274993 ACGCAGACGCAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCTGCCAAAGT 274934 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||||||||| || || | | |||| |||||||| || || || || || || Sbjct 274933 CCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATCCC 274874 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || |||||| ||||| | | || | |||| | |||||||| || | Sbjct 274873 TTCCTTGTCCTGAATTTTCTGTTTGACATTGTCAATGCTATCCGAGGGCTCCACGTCCAG 274814 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | || || || ||||| || || | |||||||||||| Sbjct 274813 CGTAATGGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 274772 >seq1355 Length=184863 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| || | || | | | ||||| || || |||||||||||||||| || Sbjct 90661 ACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGT 90720 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| || || | ||| || || | | | |||||||| || || || || || || || Sbjct 90721 ACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCC 90780 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || ||| || || |||| | || | | |||| ||||| || || | Sbjct 90781 TTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAACGTCAAG 90840 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || | || || || |||| ||| || | ||||||||||||| || Sbjct 90841 AGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCATGCCT 90886 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/227 (69%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTT-TGAATGTTGTAGTCGCTCATGG 131960 ||||| ||||| || | || | | | ||||| ||| || |||||||||||||||| | Sbjct 90889 ACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTTCTGGATGTTGTAGTCGCTCAAAG 90948 Query 131961 TACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGC 132020 |||| || || | ||| || || | | | |||||||| || || || || || || | Sbjct 90949 TACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTC 91008 Query 132021 CTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGA 132080 |||| || || ||| || || |||| | || | | |||| ||||| || || | Sbjct 91009 CTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAACGTCAA 91068 Query 132081 CCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || | || || || |||| ||| || | ||||||||||||| || Sbjct 91069 GAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCATGCCT 91115 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/223 (69%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| || | || | | | ||||| || || |||||||||||||||| || Sbjct 91118 ACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAAAGT 91177 Query 131962 -ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGC 132020 ||| || || | ||| || || | | | |||||||| || || || || || || | Sbjct 91178 TACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTC 91237 Query 132021 CTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGA 132080 |||| || || ||| || || |||| | || | | || | ||||| || |||| Sbjct 91238 CTTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGATGGCTCTACGTCGA 91297 Query 132081 CCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || ||||| || |||| ||||||||||| Sbjct 91298 GAGTGATTGTCTTTCCCGTCAGCGTCTTTACAAAAATCTGCAT 91340 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/228 (69%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||||| || | || | | |||||||| || |||||||||||||||| || Sbjct 90433 ACGCAGGCGCAACACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTCAGAGT 90492 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| || || | ||| || || | | | |||||||| || || || || || || || Sbjct 90493 ACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCC 90552 Query 132022 TTCTTTATCGGTAATT--TTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCG 132079 ||| || || |||| || || ||| ||| || | | |||| |||| || || Sbjct 90553 TTCCTTGTCCTAAATTTCTTCTGCTTC-ACTTGTCGATCGAGTCGG-AAGCTCAACGTCA 90610 Query 132080 ACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 | || | || || || |||| ||| || | |||||||||||| || Sbjct 90611 AGAGTAATAGTCTTTCCCGTCAAAGTCTTGACAAAAATCTGCATGCCT 90658 >seq1301 Length=515170 Score = 93.3 bits (102), Expect = 4e-14 Identities = 288/439 (66%), Gaps = 10/439 (2%) Strand=Plus/Plus Query 146881 ATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGA-TACACATT 146939 || || || |||||||| | ||| || || || || | ||||| | ||| || | || Sbjct 331783 ATCAAGTATTGATTGACAATTTGGAATTCACCAGCTAAAACACGAC-GAGTGTAAATGTT 331841 Query 146940 GCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGG 146999 | ||||||||||||||| | ||||| | || | ||||| | || | || || || Sbjct 331842 GGAAGTGAAAGGCTCAAAGCATTCATTGTAACCAAGAATTTGAGAGGTAGAAGCAGTCGG 331901 Query 147000 CATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGT 147059 |||| || | ||||| ||||| || | ||| | || || || ||||||||| Sbjct 331902 CATGGGAGCAAGTAACAAGGAATTACGAACACCATGTTCAGAAATCTTAGCCTTCAAAGC 331961 Query 147060 TTGCCAGTCCCACA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCT 147117 | ||| ||||||| ||| || || ||||| ||||||||||| || || | || || Sbjct 331962 TGACCAATCCCACAAGTCG--GAAGGGGTCACATTCCACATGTCATATTGCAAAACACCC 332019 Query 147118 CGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAG 147177 || | || || || | | | || ||| ||| || || ||||||||||| Sbjct 332020 TTGCTCACAGGGCTACCCGGGTAAGTTTGATAGTGTCCTTCAATTTGAGCCAATTCACAA 332079 Query 147178 CTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTA--GGACGGTCG 147235 || || | || |||||||| ||||| || |||||| || || | |||| || Sbjct 332080 GAAGCTTCCAAGGCACCATAGTAGATGGTCTCAAAGATTTGCTTATTCAATTGACGAGCG 332139 Query 147236 CTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATAC 147295 | ||| | || | ||||| |||| || | || ||||| || || || || | | Sbjct 332140 C--GTTCACAATCAAATGGCATTCGCATCAGAATGAAAGCATCAGCTAATCCTTGAACTC 332197 Query 147296 CGACGCCGATAGGTCGATG 147314 | | || || || ||||| Sbjct 332198 CAATACCAATGGGACGATG 332216 >seq1422 Length=277306 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 131931 ACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAAT 131990 |||| || || || |||||||| || ||||| || |||||||| || |||| | Sbjct 271287 ACTCCTTCTGTATATTGTAGTCAGCCAAAGTACGACCGTCCTCGAGCTGCTTGCCGGCAA 271228 Query 131991 AGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACT 132050 | || |||||||| ||||| || || || ||||| || || || ||||| || | | Sbjct 271227 ATATCAGACGCTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTTACGT 271168 Query 132051 GTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 132110 || | | || | || ||||| || | || | ||| |||||||||||||| || | Sbjct 271167 TATCGATCGAGTCCGAAGGTTCCACGTCCAAAGTGATCGTCTTACCAGTCAGAGTCTTGA 271108 Query 132111 TGAAAATCTGCAT 132123 |||||| ||||| Sbjct 271107 CGAAAATTTGCAT 271095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476598301709400