Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq368 237 2e-56 seq2144 129 8e-24 seq1526 116 5e-20 seq1342 107 3e-17 seq312 87.8 3e-11 >seq368 Length=262043 Score = 237 bits (262), Expect = 2e-56 Identities = 406/577 (70%), Gaps = 18/577 (3%) Strand=Plus/Minus Query 1455740 AACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGA-TATGGGAAATGTACCAAAAAGG 1455798 || |||||||| || || ||||| | | || || | | ||| | |||||| | |||| Sbjct 28876 AATCGCTTTGTGCTCTTTCCCATTCAGGAGCA-CGAAGTGTGGCAGATGTACAAGAAAG- 28819 Query 1455799 CCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGC-CGACACGGTCCACTGG 1455857 | || || || || ||||| || ||||| |||| || || || ||| | | ||| Sbjct 28818 CTGAAGCTTCTTTCTGGACAGCTGAGGAACTCGATCT-GGTGCACGATCTGAAAGATTGG 28760 Query 1455858 GTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGC 1455917 | || | ||| ||||||| ||||||| ||||| || ||||| || ||| || || Sbjct 28759 GCTAGCCTCACGGACAACGAGCGTTATTTCATTAAGCATGTGCTCGCTTTCTTT-GCTGC 28701 Query 1455918 CAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCC 1455977 || || ||||||||| || || || ||| |||| || || || || |||| Sbjct 28700 TAGTGACGGCATCGTGAATGAAAATCTAGCCATGAATTTTAGCAACGAAGTGCAGGTGCC 28641 Query 1455978 AGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTA 1456037 |||||| || | ||||||||||| || ||||| ||||| || || ||||| ||| || Sbjct 28640 AGAGGCTCGCTGCTTTTACGGGTTTCAAATCGCAATCGAGAATATACACTCGGAAGTGTA 28581 Query 1456038 CTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGC 1456097 |||||| |||| ||||| || |||| ||| || | ||||||||||| || | || || Sbjct 28580 CTCGCTTTTGATTGACACGTATATCAAAGACGCGATTGAGAAGGACCATCTACTACGTGC 28521 Query 1456098 CATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTG----GATCA 1456153 ||||| || | || | || | ||||| || ||||||| ||||||| |||| Sbjct 28520 TATCGAGACTATCCCTTGCGTCACCAAAAAAGCGCACTGGGCTCTGAAGTGGTGCGATCC 28461 Query 1456154 ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCAT 1456212 || ||| ||| | || | | || ||||| | | |||||| || || || ||||| Sbjct 28460 AC-----GGGTCTCTTC-CTATCCAGAACGGCTTTTGGCCTTTGCTGCAGTTGAAGGCAT 28407 Query 1456213 CTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 |||||||| ||| |||||| ||||||||||||||||||||||||| | ||||| || Sbjct 28406 TTTTTTCTCTGGCTCATTCTGCTCCATCTTTTGGCTCAAGAAGCGCGGTTTAATGCCTGG 28347 Query 1456273 TCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 || | ||||| ||||| |||| || || ||||| Sbjct 28346 TC-TAAGCTTTTCAAACGAGCTTATTAGCCGGGACGA 28311 >seq2144 Length=147109 Score = 129 bits (142), Expect = 8e-24 Identities = 320/478 (67%), Gaps = 7/478 (1%) Strand=Plus/Minus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAG 332932 ||||| | || || || || ||||| | ||| || || | | | | ||| ||||||| Sbjct 93739 AAGCGTAAAATCGCGCACCGACTCTGGATGGC-TCAATAATCTTGGTCGAGTTGTTGCAA 93681 Query 332933 GCCAGGGCAAACCGCGTCGTAT-TGGTATGCTTTTCCATGGT-CGACCGGAGGGCCTGTT 332990 |||| ||||| ||||| || || | | || |||| || |||| | | ||||| | Sbjct 93680 GCCAATGCAAAGCGCGTGGTGGCTGAAAAGATT--CCATCGTGCGAC-GCAAAGCCTGCT 93624 Query 332991 GGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCG 333050 ||||||| | || | ||||||| |||||||| |||| || ||||||||| ||| | | Sbjct 93623 GGGCCGCAGCAGTCATCGAGTCGGCTTCGTCGAGAATGACGAGCTTGTGGCGGCCGGGAG 93564 Query 333051 GCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGC 333110 | || ||| | | | || ||||| || | ||||| ||| | || | Sbjct 93563 GAAGCGTCACCTTCTGCTGCGCAAACATCTTGATCTTCGTCCGCACCGTGTCGATACCAC 93504 Query 333111 GCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGC 333170 | |||||||| ||||| ||||||||||| || | | | || || ||| | | ||| Sbjct 93503 GATCGTCCGATGCGTTCAGTTCGAGCACTGCTTGCTTGACGCTCGGACCGAGCAACTCGC 93444 Query 333171 GCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCCGCCAGCAAGAGGT 333230 |||| || ||| |||||||| |||||||| |||| ||| ||||| | || | | | Sbjct 93443 GCGCGAGACACAAAATGCTCGTCGTCTTGCCAGTGCGGGGAGGACCAGAGAGGATTAAAT 93384 Query 333231 TGGGCATGTTGCCGTCGGCGGCCAGCGCCTTGAGGTAGGCAACGGCGTGCTCGTTGCCGA 333290 | | |||||| ||| | |||| || | ||| ||| | | || |||||| | Sbjct 93383 TCGTCATGTTACCGGCCCGTGCCATGGCTTGGAGACTGGCCATAGTGTCACGGTTGCCCA 93324 Query 333291 CAATGTCGTCGAGCACCATTGGGCGGTACTTTTCGATCCATGGGAGGCCAAAGTCGGC 333348 | | |||| ||| | |||||||||||||||| ||| || |||||||||| Sbjct 93323 CGACGTCG-AGAGAAGGCGCGGGCGGTACTTTTCGACCCACGGCGCCTCAAAGTCGGC 93267 >seq1526 Length=132622 Score = 116 bits (128), Expect = 5e-20 Identities = 241/353 (68%), Gaps = 8/353 (2%) Strand=Plus/Minus Query 1455962 AAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACA 1456021 |||| || ||| | ||||| || |||| |||||||||||||| ||| || ||||||| Sbjct 119058 AAGAAGTTCAAGTTCCAGAAGCTCGTTGCTTTTACGGGTTCCAAATCATGATTGAAAACA 118999 Query 1456022 TCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGG 1456081 | ||| |||||| ||||| ||||| || || |||||| | ||||| || ||| Sbjct 118998 TTCACGCTGAAATGTACTCTCTCCTCATTGATACCTACATTCGTGACCCAGTTGAGCGTA 118939 Query 1456082 ACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGA 1456141 | ||| || ||||| ||||| | || | || | || |||| |||||||| | Sbjct 118938 AATTCCTTTTCAATGCCATTGACACCATCCCTTGTGTTCGCAAGAAGGGAGACTGGGCTA 118879 Query 1456142 TGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG- 1456200 || ||||| | || | || | |||| || || || || | ||||| | Sbjct 118878 TGCGTTGGATTGAAAATCA--AACTAGCTGTTTTGGAGAACGCCTTGTTGCTTTTGCTGC 118821 Query 1456201 CGTCGAGGGCATCTTTTTCTCGGG--CAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGC 1456258 ||| || || ||||| || || || || || || ||||| || ||| | ||||||||| Sbjct 118820 CGTGGAAGGTATCTTCTTTTCCGGTTCATTTGCT--GCCATTTTCTGGTTGAAGAAGCGC 118763 Query 1456259 GGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311 || | ||||||||| || ||| ||| ||| | ||||| || ||||||| Sbjct 118762 GGGTTGATGCCCGGT-TTGACCTTCTCCAATGAACTAATCAGCCGTGACGAAG 118711 >seq1342 Length=132421 Score = 107 bits (118), Expect = 3e-17 Identities = 201/301 (67%), Gaps = 4/301 (1%) Strand=Plus/Plus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 || || ||| |||||||||| | || || ||| ||||| || ||||||||||| || Sbjct 1778 ACGTATGAGCTCATGTCGCAGAAATTCTTTACCCACGCGACACCGACGCTCTTTAACGCA 1837 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 ||||| || || || |||||||||||||| | | Sbjct 1838 GGCACTCCTCGTCCNTTACCCTCGTCGTGCTTTCTCTNNNNNNNNNNNNNNNNNNNNNTT 1897 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 || ||||| ||||||||||||||||| || ||| ||| || || ||||||||| ||| Sbjct 1898 GAAGGCATTTATGACACGCTCAAGCAATGTGCGTGCATTTCGAAATGGGCCGGCGGGATC 1957 Query 260063 GGTTTTGCCGCA--CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCC 260120 || | | | | ||||| | || ||| | | |||| | ||||| ||||| Sbjct 1958 GGGAT--CAGTATGCACAACATTCGTGCCACCAACAGCTACATCCGAGGCACGAACGGGT 2015 Query 260121 AGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACC 260180 ||| || ||| | | || ||| | ||||| ||||| ||||||||||| |||||||| | Sbjct 2016 CGTCGAATGGCATCATTCCAATGTTGCGCGTCTTTAATGACACGGCGCGGTACGTCGATC 2075 Query 260181 A 260181 | Sbjct 2076 A 2076 >seq312 Length=309945 Score = 87.8 bits (96), Expect = 3e-11 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 262873 GGCCGCTGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTCG 262932 |||| |||||| |||| |||||| || ||| |||||||| || || |||||| Sbjct 18932 GGCCTCTGGGATTGGGCGGCACTGAAGGAAAAGGTCATGCAGCATGGGCTCCGGAACTCG 18991 Query 262933 TTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCG 262992 | | || |||| |||||||||||| |||| | || ||| ||||||||| ||| || Sbjct 18992 CTCTTGGTCGCGCCCATGCCCACGGCGTCGACCGCTCAAATCTTGGGCAACAACGAATCG 19051 Query 262993 TTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGT 263030 | ||| | | ||| |||||| |||| |||||||| Sbjct 19052 ATTGAGCCCTTTACGTCCAACATGTACAATCGCCGCGT 19089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177602381770730