Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1422 134 1e-26 seq1110 122 8e-23 seq1355 105 6e-18 seq1775 91.5 1e-13 >seq1422 Length=277306 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||| || | |||| |||||| ||||| ||||| || ||||| || || |||| || Sbjct 271531 ACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCAGCCAAAGTACGACCGTCCTCG 271472 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 |||||||| || ||||| |||| |||||||| || | |||| || ||||||||| | Sbjct 271471 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGTGGAATGCCTTCCTTGTCCTGG 271412 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||||||||| | | | | | || || | ||||| |||| ||| ||||| ||| Sbjct 271411 ATCTTTTGCTTTACATTGTCGATCGAATCCGAGGGCTCCACGTCCAGCGTAATCGTCTTA 271352 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||||||| || ||||| || ||||| Sbjct 271351 CCAGTCAAAGTCTTTACAAAAATTTGCAT 271323 Score = 132 bits (146), Expect = 4e-26 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | ||||| |||||| || || ||||| || ||||| || || |||| || Sbjct 271304 CACCAGGTGGAGCGTACACTCCTTCTGTATATTGTAGTCAGCCAAAGTACGACCGTCCTC 271245 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||||| || |||||||||| |||||||| || | |||| | ||||||||| Sbjct 271244 GAGCTGCTTGCCGGCAAATATCAGACGCTGCTGATCAGGTGGAATTCCTTCCTTGTCCTG 271185 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||||||||| | | | | || ||| | |||||| |||| |||||||| || Sbjct 271184 GATCTTTTGCTTTACGTTATCGATCGAGTCCGAAGGTTCCACGTCCAAAGTGATCGTCTT 271125 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 ||| |||| ||| || || || || |||||| Sbjct 271124 ACCAGTCAGAGTCTTGACGAAAATTTGCATT 271094 >seq1110 Length=486086 Score = 122 bits (134), Expect = 8e-23 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||||||||||||||| || || | | || | || || || ||||| || ||||| | Sbjct 256292 CCTTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGA 256233 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 |||| ||||||||||| | |||| || ||||||||| ||| || ||||| | | ||| Sbjct 256232 TCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACA-TTG 256174 Query 35667 CCACCG-TGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 || | |||| || |||||| |||| ||| || || || |||||||| || || ||| Sbjct 256173 TCAATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACA 256114 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 256113 AAAATCTGCAT 256103 >seq1355 Length=184863 Score = 105 bits (116), Expect = 6e-18 Identities = 142/194 (73%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 35545 CTCCTTT-TGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAA 35603 ||||||| || |||||||| ||| ||| || || |||| |||| |||||| || |||| Sbjct 90919 CTCCTTTCTGGATGTTGTAGTCGCTCAAAGTACGGCCGTCCTCCAACTGCTTGCCAGCAA 90978 Query 35604 ATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAG 35663 | || | || |||||||| | |||| | ||||||||| ||||| ||||||| | Sbjct 90979 AAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCAC-G 91037 Query 35664 TTGCC-ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 ||| | | || |||| | || || || | ||||| || || ||||||||||| || Sbjct 91038 TTGTCGATCGAGTCGGAAGGCTCAACGTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTG 91097 Query 35723 ACAAATATCTGCAT 35736 || || |||||||| Sbjct 91098 ACGAAAATCTGCAT 91111 Score = 102 bits (112), Expect = 7e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||| || || || |||| |||| |||||| || ||||| Sbjct 90691 CTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAA 90750 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || |||||||| | |||| | ||||||||| ||||| ||||||| || Sbjct 90751 AATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCAC-GT 90809 Query 35665 TGCC-ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | || |||| | || || || | ||||| || || ||||||||||| || | Sbjct 90810 TGTCGATCGAGTCGGAAGGCTCAACGTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGA 90869 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 90870 CGAAAATCTGCAT 90882 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 35506 ATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATC 35565 |||||||||||| | | |||||| | || | || ||| || || |||||||| || Sbjct 90424 ATTTCCACCACGCAGGCGCAACACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTC 90483 Query 35566 GGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGA 35625 | || || || |||| |||| |||||| || ||||| || | || |||||||| | Sbjct 90484 GCTCAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGG 90543 Query 35626 AGGAACGCTCTCCTTGTCC--ATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGA 35682 |||| | ||||||||| | |||| |||||| | ||| | | || |||| | Sbjct 90544 TGGAATTCCTTCCTTGTCCTAAATTTCTTCTGCTTC--ACTTGTCGATCGAGTCGGAAG- 90600 Query 35683 TTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || || | || || || || ||||||||||| || ||||| |||||||| Sbjct 90601 CTCAACGTCAAGAGTAATAGTCTTTCCCGTCAAAGTCTTGACAAAAATCTGCAT 90654 >seq1775 Length=332822 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | | |||||| | || | ||| || || ||||| ||||| || ||| Sbjct 274998 CCGCCACGCAGACGCAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCTGCC 274939 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || |||||||| || ||||| |||| ||||||||||| | ||| Sbjct 274938 AAAGTCCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGA 274879 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCG-TGTCGCTCGATTCCAC 35688 | | ||||||||| || || || || | | ||| || | | || | ||||| Sbjct 274878 ATCCCTTCCTTGTCCTGAATTTTCTGTTTGACA-TTGTCAATGCTATCCGAGGGCTCCAC 274820 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 |||| ||| || || || ||||||| || || || || ||||||||| Sbjct 274819 GTCCAGCGTAATGGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCATT 274771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450781400398200