Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq100 558 4e-154 >seq100 Length=112360 Score = 558 bits (618), Expect = 4e-154 Identities = 698/957 (73%), Gaps = 0/957 (0%) Strand=Plus/Plus Query 157703 AACCGTTTGTATGTTGGTTGGTTCGGTGTACTGATGATTCCTACGTTGCTTGCTGCAACT 157762 ||| | || || |||| |||||||| || |||||||||||||| | | | || ||| Sbjct 40179 AACAGATTATACATTGGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACT 40238 Query 157763 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGCGAA 157822 | |||||||| ||| || |||| ||||| || || |||||||| || || ||||| Sbjct 40239 ACATGTTTCATTATCGGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAG 40298 Query 157823 CCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTAGT 157882 ||||| ||||| || || | ||||| |||||||| || | || || || |||||||| Sbjct 40299 CCAGTAGCTGGATCCCTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGT 40358 Query 157883 TCAAACGCAATCGGTCTCCACTTCTACCCCATCTGGGAAGCAGCATCTCTTGACGAGTGG 157942 ||||||||||| ||| | || || || || || |||||||| || ||| |||| || ||| Sbjct 40359 TCAAACGCAATTGGTGTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGG 40418 Query 157943 CTGTATAACGGTGGTCCTTTCCAACTTGTAGTATTCCACTTCCTGATCGGCATCTATGCC 158002 | |||||||||||||| | ||||| ||||||| |||||| | | || | | Sbjct 40419 TTATATAACGGTGGTCCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGT 40478 Query 158003 TATATGGGACGTGAGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGTA 158062 ||| | || |||||||||||| | | || ||||| |||||||| ||||| | ||| Sbjct 40479 TATTTAGGTCGTGAGTGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTT 40538 Query 158063 GCATATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAA 158122 || | ||| |||||||| |||||||| | || |||||| || | ||||| | || ||| Sbjct 40539 GCCTTTTCCGCTCCAGTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAA 40598 Query 158123 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 158182 || ||| || |||| ||||||| | || || || || |||||||||| |||| | || Sbjct 40599 GGAAGTTTTTCTGATGGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTT 40658 Query 158183 TTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTA 158242 |||||||| || || ||||| | ||||| || || || ||| ||||| ||||| || Sbjct 40659 TTCCAAGCCGAGCATAACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTT 40718 Query 158243 TTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGT 158302 || || || || | || ||||| ||||| ||| | | || ||||| ||| | ||||| Sbjct 40719 TTTGGAGGTTCATTATTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGT 40778 Query 158303 GAAACGACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAAGAAGAGACC 158362 ||||| |||||| || |||| || || || || || || || ||||||||||| || Sbjct 40779 GAAACTTCTGAAAGCGAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACA 40838 Query 158363 TACAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTC 158422 || || || ||||| || || || || ||||| | || || || |||||||| || Sbjct 40839 TATAATATTGTTGCTGCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTT 40898 Query 158423 AACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTC 158482 || ||||| ||||| || ||||||||| | ||||||||||| || || || || ||||| Sbjct 40899 AATAACTCACGTTCATTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTA 40958 Query 158483 ACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCC 158542 || || | || | || ||||| || ||| | ||||| || ||||| || || || Sbjct 40959 ACTGCATTAGGAATTAGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCG 41018 Query 158543 ATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGT 158602 || ||||| | || || | || | ||||| ||||||||| | | ||| | || | Sbjct 41019 ATTATTGATAGCCAAGGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAAAT 41078 Query 158603 CTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTGGATCTTGCT 158659 ||||| || ||||| |||||||| ||||| || || ||||||||| | ||||||||| Sbjct 41079 CTTGGAATCGAAGTAATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGCT 41135 Score = 488 bits (540), Expect = 6e-133 Identities = 718/1011 (71%), Gaps = 4/1011 (0%) Strand=Plus/Plus Query 159391 GATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTT 159450 ||||||||||| ||| ||| | ||||| ||||| || |||||||| | || | || Sbjct 28586 GATGACTGGCTAAAAAAAGACAGATTTGTATTTGTAGGATGGTCTGGTTTATTATTATTT 28645 Query 159451 CCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTTTTATCACGAGTTGG 159510 || || ||| | || | || || ||| ||||||| | || ||| | || |||| Sbjct 28646 CCGTGCGCGTATTTAGCTCTAGGAGGATGGTTTACTGGAATCACATTTGTTACCTCTTGG 28705 Query 159511 TACACCCACGGTCTTGCTAGTTCCTACCTTGAAGGTGCTAATTTTCTCACGGCAGCTGTC 159570 || ||||| || | ||||| |||| | |||||| ||||||| | ||||| ||||| Sbjct 28706 TATACCCATGGCTTAGCTAGCTCCTTTTTAGAAGGTTGTAATTTTTTAACGGCTGCTGTT 28765 Query 159571 TCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAA 159630 ||||| || ||| || |||||| |||||| | ||||| | ||||| || || | ||| Sbjct 28766 TCAACACCAGCTAATAGTATGGGACATTCTTTACTTCTTTTATGGGGACCAGAAGCGCAA 28825 Query 159631 GGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTTGCTCTCCACGGT 159690 || | || |||| || ||||||| ||||| | |||||||| | ||||| Sbjct 28826 GGAAATTTTTCTGTATGGTTTAAAATTGGAGGTCTTTGGACATTTGTTGCCTTACACGGA 28885 Query 159691 GCATTCGCTCTCATAGGTTTTATGCT-ACGGCAATTTGAAATTGCTCGTCTAGTTGGTAT 159749 || || || || || || ||| |||| ||| ||||||||||||||||| |||| || || Sbjct 28886 GCTTTTGCACTAATTGGATTT-TGCTTACGACAATTTGAAATTGCTCGATTAGTAGGAAT 28944 Query 159750 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCCT 159809 || |||||||||||| | || || || | || || || ||||||| ||| || | Sbjct 28945 TCGACCTTACAATGCTTTAGCATTTTCAGCACCGATCGCCATTTTTGTTTCCGTTTTTTT 29004 Query 159810 TATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAAT 159869 | ||||| | || || | ||||| |||||||| ||||| || || |||||||| Sbjct 29005 ACTTTATCCTTTAGGGCAAGCAAGCTGGTTTTTTGCACCAAGTTTTGGTGTTGCAGCAAT 29064 Query 159870 CTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATAT 159929 ||| |||| | | ||| | || || ||||| || ||||| | || || |||||||| Sbjct 29065 TTTTCGATTTTTACTATTCTTACAAGGATTCCATAATTGGACATTAAATCCATTCCATAT 29124 Query 159930 GATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTGCTACTGT 159989 ||||||||||||||| || |||| | || | | |||||||| |||||||||||||| Sbjct 29125 GATGGGAGTTGCTGGAGTATTAGGAGCTGCGTTACTATGTGCAATTCATGGTGCTACTGT 29184 Query 159990 AGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAAGGCGTTTGAGCCTAC 160049 || || || | | |||||||||||| |||||| ||||||| || ||| ||||| Sbjct 29185 TGAAAATACTCTTTATGAAGATGGAGATGCAGCAAATACATTTAGAGCCTTTACCCCTAC 29244 Query 160050 TCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 160109 |||| ||||| || ||||| ||||| || || ||| | || ||||| || || || || Sbjct 29245 TCAATCGGAAGAAACATATTCCATGGTTACAGCCAACAGATTTTGGTCACAAATTTTTGG 29304 Query 160110 TGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGG 160169 || || ||||| || || | ||| | || ||||| ||| | ||||| ||||| | || Sbjct 29305 AGTAGCTTTTTCCAATAAAAGATGGTTACACTTTTTTATGCTATTTGTTCCTGTAACCGG 29364 Query 160170 TCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCTTCGTGCTTACGATTT 160229 | ||||| || | | || || ||| | || ||||| || ||| | || || || || || Sbjct 29365 TTTATGGGCAAGCGCAATAGGAATTGTAGGACTTGCATTAAACTTACGCGCCTATGACTT 29424 Query 160230 CGTGAGTCAGGAGATTA-GAGCAGCAGAAGATCCTGAATTTGAGACCTTCTACACCAAGA 160288 | || || |||| |||||||||||||||| ||||| || || ||||| || || | Sbjct 29425 TATTTCGCAAGA-ATTACGAGCAGCAGAAGATCCGGAATTCGAAACATTCTATACAAAAA 29483 Query 160289 ACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGATCAACCACATGAAA 160348 | || | || ||||||||| | | |||||||| | || || |||||||||| Sbjct 29484 ATATTATTTTAAATGAAGGAATAAGATTATGGATGGCTGCACAAGACCAGCCACATGAAA 29543 Query 160349 ACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACTGTGATTAA 160399 | | ||| || || || || ||| |||| | || ||||| || |||| || Sbjct 29544 ATTATATATTTCCAGAAGAGGTATTACCACGTGGAAACGCGCTTTGATGAA 29594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573008492538000