Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq100 549 2e-151 >seq100 Length=112360 Score = 549 bits (608), Expect = 2e-151 Identities = 687/942 (73%), Gaps = 0/942 (0%) Strand=Plus/Plus Query 160002 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCGTC 160061 || |||||||| || |||||||||| || || || |||| || | |||||||| || Sbjct 40194 GGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACTACATGTTTCATTATC 40253 Query 160062 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 160121 | || |||| ||||| || || ||||| || || || || || || || ||||| || Sbjct 40254 GGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCTGGATCC 40313 Query 160122 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGT 160181 || | ||||| |||||||| || | || || || |||| ||| |||||||||||| Sbjct 40314 CTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCAATTGGT 40373 Query 160182 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 160241 |||| || ||||| || |||||||| || || ||||||| ||| | |||||||||||| Sbjct 40374 GTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAACGGTGGT 40433 Query 160242 CCTTTCCAACTCGTAGTATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAG 160301 || | ||||| ||||||| |||||| | | || | | ||| | || |||||| Sbjct 40434 CCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGTCGTGAG 40493 Query 160302 TGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCA 160361 |||||| | | || ||||| |||||||| ||||| | ||| || | ||| |||||| Sbjct 40494 TGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCCGCTCCA 40553 Query 160362 GTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGAT 160421 || ||||||||| | ||||||||| | | ||||| | || ||||| ||| || ||| Sbjct 40554 GTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTTTCTGAT 40613 Query 160422 GCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACAC 160481 | ||||||| | || || || || |||||||||| |||| | || |||||||| || || Sbjct 40614 GGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCCGAGCAT 40673 Query 160482 AATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTG 160541 || || | |||||||| || |||||| || || ||||| || || || || || || Sbjct 40674 AACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGTTCATTA 40733 Query 160542 TTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACA 160601 || ||||| ||||||||| | | || ||||| ||| | |||||||||| |||||| Sbjct 40734 TTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCTGAAAGC 40793 Query 160602 GAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCA 160661 || |||| || || || || || || || ||||| ||||| || || || || || || Sbjct 40794 GAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATATTGTTGCT 40853 Query 160662 GCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCA 160721 || || || || ||||| | || || || ||||| ||| || || ||||| |||||| Sbjct 40854 GCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCACGTTCA 40913 Query 160722 CTTCACTTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTT 160781 | ||||||||| | || |||||||| ||||| ||||| ||||| ||||| | || || Sbjct 40914 TTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATTAGGAATT 40973 Query 160782 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAA 160841 || || ||||| || ||| | ||||| || ||||| || || || || | ||| | ||| Sbjct 40974 AGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCAA 41033 Query 160842 GGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTT 160901 || | ||| | ||||| |||||||| | | || | || |||||| || ||||| Sbjct 41034 GGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAATCGAAGTA 41093 Query 160902 ATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTCGCT 160943 |||||||| ||||| || || ||||||||| | || || ||| Sbjct 41094 ATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGCT 41135 Score = 383 bits (424), Expect = 2e-101 Identities = 695/1009 (69%), Gaps = 6/1009 (1%) Strand=Plus/Plus Query 161700 GACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTT 161759 || |||||||| ||| || | || || ||||| || |||||||| || || || || Sbjct 28586 GATGACTGGCTAAAAAAAGACAGATTTGTATTTGTAGGATGGTCTGGT-TTATTATTATT 28644 Query 161760 CCCACT-GCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTCGCAACGAGCTG 161818 || || ||| | ||| | || || ||| ||||||| | || || | || || Sbjct 28645 TCCGTGCGCGTATTTAGCTCTAGGAGGATGGTTTACTGGAATCACATTTGTTACCTCTTG 28704 Query 161819 GTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTTACAGCGTCAGT 161878 |||||||||||| | ||||| |||| | | || ||| || ||| | || || | || Sbjct 28705 GTATACCCATGGCTTAGCTAGCTCCTTTTTAGAAGGTTGTAATTTTTTAACGGCTGCTGT 28764 Query 161879 TAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCA 161938 | || |||||| | |||||| |||||| | |||||| | ||||| || || || || Sbjct 28765 TTCAACACCAGCTAATAGTATGGGACATTCTTTACTTCTTTTATGGGGACCAGAAGCGCA 28824 Query 161939 AGGGGATTTCGTCCG-CTGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATG 161997 ||| |||| || | ||| | || |||| || || |||| ||||| || | || | Sbjct 28825 AGGAAATTT-TTCTGTATGGTTTAAAATTGGAGGTCTTTGGACATTTGTTGCCTTACACG 28883 Query 161998 GTGCCTTCGCCCTAATTGGATTCATGC-TCCGTCAGTTTGAACTGGCACGTCTTATTGGT 162056 | || || || ||||||||||| ||| | || || |||||| | || || | | || Sbjct 28884 GAGCTTTTGCACTAATTGGATT-TTGCTTACGACAATTTGAAATTGCTCGATTAGTAGGA 28942 Query 162057 ATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTC 162116 || || || ||||||||| | || || || | || || || ||||||| ||| || Sbjct 28943 ATTCGACCTTACAATGCTTTAGCATTTTCAGCACCGATCGCCATTTTTGTTTCCGTTTTT 29002 Query 162117 CTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCA 162176 | | || || || || || | || |||||||| || || ||||| || |||||| Sbjct 29003 TTACTTTATCCTTTAGGGCAAGCAAGCTGGTTTTTTGCACCAAGTTTTGGTGTTGCAGCA 29062 Query 162177 ATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTCCAT 162236 || ||| |||| | | || | |||||||||||||| ||||| | || || |||||| Sbjct 29063 ATTTTTCGATTTTTACTATTCTTACAAGGATTCCATAATTGGACATTAAATCCATTCCAT 29122 Query 162237 ATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTCACA 162296 ||||||||||||||||| || |||| | || | |||| ||| ||||| || | || Sbjct 29123 ATGATGGGAGTTGCTGGAGTATTAGGAGCTGCGTTACTATGTGCAATTCATGGTGCTACT 29182 Query 162297 GTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCG 162356 ||||||||||| | || || |||||||| |||||| || |||| || ||| | Sbjct 29183 GTTGAAAATACTCTTTATGAAGATGGAGATGCAGCAAATACATTTAGAGCCTTTACCCCT 29242 Query 162357 ACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 162416 || || |||||| || ||||| ||||| || || ||| | || ||||| || || || Sbjct 29243 ACTCAATCGGAAGAAACATATTCCATGGTTACAGCCAACAGATTTTGGTCACAAATTTTT 29302 Query 162417 GGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATG 162476 || | || ||||| || || | ||| | || ||||| ||| | ||||| ||||| | Sbjct 29303 GGAGTAGCTTTTTCCAATAAAAGATGGTTACACTTTTTTATGCTATTTGTTCCTGTAACC 29362 Query 162477 GGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGAT 162536 ||| ||||| || | | || || ||| | || ||||| | ||| | || || || || Sbjct 29363 GGTTTATGGGCAAGCGCAATAGGAATTGTAGGACTTGCATTAAACTTACGCGCCTATGAC 29422 Query 162537 TTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACGTTCTACACTAAG 162596 || | || || | |||||||||||||||| || || ||||| ||||| || || Sbjct 29423 TTTATTTCGCAAGAATTACGAGCAGCAGAAGATCCGGAATTCGAAACATTCTATACAAAA 29482 Query 162597 AACATTCTGCTCAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAG 162656 || ||| | | ||||||||| || | |||| | || | ||||| || ||||| Sbjct 29483 AATATTATTTTAAATGAAGGAATAAGATTATGGATGGCTGCACAAGACCAGCCACATGAA 29542 Query 162657 AACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 162705 || | ||| || |||||||| || | || | || ||||| |||| || Sbjct 29543 AATTATATATTTCCAGAAGAGGTATTACCACGTGGAAACGCGCTTTGAT 29591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559488858423000